Query= MSMg01no072_a12.b1 MSMg01no072_a12.b1 CHROMAT_FILE:
MSMg01no072_a12.b1 PHD_FILE: MSMg01no072_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:38 2005
(577 letters)
>mm_chr1_10998822_10999797
Length = 976
Score = 864 bits (447), Expect = 0.0
Identities = 471/479 (98%), Gaps = 1/479 (0%)
Strand = Plus / Minus
Query: 5 gaattctcacagtctgcataagaaatatttgtaggaaaaacatataatgcaaaatagtac 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattctcacagtctggataagaaatatttgtaggaaaaacatataatgcaaaatagtac 419
Query: 65 gtatgtgtgtattttttaagtccaataaacaggctttttcttgttttaataaaagcaccc 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atatgtgtg-cttttttaagtccaataaacaggctttttcttgttttaataaaagcaccc 360
Query: 125 atccatactagctgacattcttcatctctcagtaaaggtttgcttagatttccaaaaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atccatactagctgacattcttcatctctcagtaaaggtttgcttagatttccaaaaatg 300
Query: 185 cagggaacctaaatctcatccaaatgtgtgttctaaactgagtttaaacatcagaggact 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 299 cagggaacctaaatctcatccaaatgtatgttctaaactgagtttaaacatcagaggact 240
Query: 245 aaattctgaactgtttactaccaatgaccatgttcctttaaggtttcaaaagcctatgtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaattctgaactgtttactaccaatgaccatgttcctttaaggtttcaaaagcctatgtc 180
Query: 305 aggctcagtctctctccatctctacctgttgcttgtggataaaatgtaatttctcagcta 364
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 179 aggcccagtctctctccatctctacctgtcgcttgtggataaaatgtaatttctcagcga 120
Query: 365 cttctccagtgccacatctgcctacctgcatggtgtcatgcttcccttcataatgatcat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cttctccagtgccacatctgcctacctgcatggtgtcatgcttcccttcataatgatcat 60
Query: 425 ggactaaccttctgaaactgtatgcaagcacctattatgtgttttctttctttcataag 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 ggactaaccttctgaaactgtatgcaagcacctattatgtgttttctttctttcataag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space: 547722
Effective search space used: 547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_a12.g1 MSMg01no072_a12.g1 CHROMAT_FILE:
MSMg01no072_a12.g1 PHD_FILE: MSMg01no072_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:38 2005
(515 letters)
>mm_chr1_10826757_10827672
Length = 916
Score = 967 bits (500), Expect = 0.0
Identities = 512/516 (99%), Gaps = 1/516 (0%)
Strand = Plus / Plus
Query: 1 cacgggaaaag-atgctaatttggaaaatcattacttttgtggaagatttgattttgtga 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgggaaaagcatgctaatttggaaaatcattacttttgtggaagatttgattttgtga 260
Query: 60 aaaaaaatgtattaagggattaagacaatgctttattcagtcaggaactattattggctc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaatgtattaagggattaagacaatgctttattcagtcaggaactattattggctc 320
Query: 120 actccagcttttgcttatttaacatctttatatatcctaagaccacctgccaaggggatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actccagcttttgcttatttaacatctttatatatcctaagaccacctgccaaggggatg 380
Query: 180 gtaccattgacaaacagctatgccctcctacatcaatcaattatcaacacaatccctcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaccattgacaaacagctatgccctcctacatcaatcaattatcaacacaatccctcac 440
Query: 240 aagcacgctcactgccaatctgataagagggagagtatatttgctgtcatgagaaggctg 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcatgctcactgccaatctgataagagggagagtatatttgctgtcatgagaaggctg 500
Query: 300 gtacatatatgaatttacacgagctgtgcctatatgcacacgacctgaacaaaatcaagg 359
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gtacatatatgaatttacatgagctgtgcctatatgcacatgacctgaacaaaatcaagg 560
Query: 360 cagacaaactcccaccataggtctgggacaagttctgtaatcctattcatagctgaagag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacaaactcccaccataggtctgggacaagttctgtaatcctattcatagctgaagag 620
Query: 420 ctattggcaactgattgcggccagaagagagagggacagtttgctttgaggatgcagtcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctattggcaactgattgcggccagaagagagagggacagtttgctttgaggatgcagtcc 680
Query: 480 ttgaaagactctggtgctccagtagatggccctaca 515
||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgaaagactctggtgctccagtagatggccctaca 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
