CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCAGTCTTCTTTGCTGATGATAAGTAATAACAGGTAGTATATTCTGGTA
TCAATATACCACATTTTCCTTGCTATTCATTTATCGATAGAGATTCCAGT
TGTCTGTTGTAAGTAGATGCTAGTGTCCCTATGCTAACATTGTACTGTTC
TGGTTACTATGTAGAGTTCTATAGGGTCAGAGTTTTTACTTATCATACAT
TAAAGCTGAGGATTGCAATGGGCAGGTAATGCGCTAAATGTACTCTTATT
AAAATTAATTTTTTAAAAAAACACCAAACTATTTCTCAAATAATCATATC
AATTTAAGCCCCTATTATCAATGTAAAAATATCAATTTTCTCCACATTCT
TGCTAACACTTTTTGTGTTACTCTTTCATTAATATGGGTACATGCAGTTC
ATCTGTATTAGATCTACATTTGCCTAGTTACTAATGGTGTTGAATGCCTC
TTTATGTGGAAACTTTTATTAAGTATCCACTCAGGGATTTTGCATATTGT
GATAGATTATCTTATTCTAGGAATCTCTCCCTGTGTTTACACACAAATCT
TTTTTTCAGGTATGTAGTACGAATATGTTCTCTCTCTCTGGGTTGCATGT
TCACTTTTATAATGGCGTCTTTTGTAGAGCAGATCTTTCCTGCTTTGATG
ACATCC

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGGGAAGATTCCAGAACAGTGACTGTTCT
TTGGTCCTCTCCCTTTATCTGAGGGTCTTCACTGCCTCCTCTGTTTGCTT
AGTGTTCCCGGCAAGGAAAAATGCCTAGAAATCAGCTTCGAAATGATTTG
ACTTATTGCTGTGACCTGTTATTTTATTTCCTTTTACAACCAACAGCTGG
CTCCTCTCCAGGGGCCCTCTCTAATTAGTCAGTGCTCAGAACTCATTTAC
ATGCCATTACCACCCCAGCTATGGTCTCCAGAAAGGGAAGAAAGAAAGTA
GGCAGAGCTCATTAAAAAGCATCTTGGGGCAAATCCCAGAGGGCTGCTCT
GTCTCTAGGAGAACTCACCCTAAGGCCACAGCACCTTCTGACACCAAATA
ATAGGGAAGAAAGGGGTAGGAGAACAGGAGGCAGCAAAAAGCTATGTCTC
TTCTCATGGTGCTTTAAAATAAACTATGGACTCTGGGAGCTGAGGGAGCT
CGAAGGAACAGATGTAGGAAAAAGCCTCTTATCTTGTTAATAAATTTAAA
ATAGAATTCTTTTATTAATCATATGTGTTTATTCTCTAAACTTACTGTGA
TCAAACGTTTTATATCTAGGAACTAAGACCATACAATCTTGTGTGTGTGT
TTCCC

Query= MSMg01no072_b13.b1 MSMg01no072_b13.b1 CHROMAT_FILE:
MSMg01no072_b13.b1 PHD_FILE: MSMg01no072_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:43 2005
         (635 letters)



>mm_chr1_178163594_178164628
          Length = 1035

 Score =  658 bits (340), Expect = 0.0
 Identities = 361/368 (98%)
 Strand = Plus / Minus

                                                                        
Query: 268  ttttttaaaaaaacaccaaactatttctcaaataatcatatcaatttaagcccctattat 327
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 1035 ttttttaaaaaaacaccaaactatttctcaaatgatcatatcaatttaagcccctactat 976

                                                                        
Query: 328  caatgtaaaaatatcaattttctccacattcttgctaacactttttgtgttactctttca 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  caatgtaaaaatatcaattttctccacattcttgctaacactttttgtgttactctttca 916

                                                                        
Query: 388  ttaatatgggtacatgcagttcatctgtattagatctacatttgcctagttactaatggt 447
            ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 915  ttaatatgggtacgtgcagttcatctgtattaggtctacatttgcctagttactagtggt 856

                                                                        
Query: 448  gttgaatgcctctttatgtggaaacttttattaagtatccactcagggattttgcatatt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  gttgaatgcctctttatgtggaaacttttattaagtatccactcagggattttgcatatt 796

                                                                        
Query: 508  gtgatagattatcttattctaggaatctctccctgtgtttacacacaaatctttttttca 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  gtgatagattatcttattctaggaatctctccctgtgtttacacacaaatctttttttca 736

                                                                        
Query: 568  ggtatgtagtacgaatatgttctctctctctgggttgcatgttcacttttataatggcgt 627
            ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 735  ggtatgtagtacgaatatgttctctctctctggttttcatgttcacttttataatggcgt 676

                    
Query: 628  cttttgta 635
            ||||||||
Sbjct: 675  cttttgta 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no072_b13.g1 MSMg01no072_b13.g1 CHROMAT_FILE:
MSMg01no072_b13.g1 PHD_FILE: MSMg01no072_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:43 2005
         (588 letters)



>mm_chr1_178028808_178029795
          Length = 988

 Score = 1091 bits (564), Expect = 0.0
 Identities = 582/588 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggggaagattccagaacagtgactgttctttggtcctctccctttatctgagggtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggggaagattccagaacagtgactgttctttggtcctctccctttatctgagggtctt 260

                                                                       
Query: 61  cactgcctcctctgtttgcttagtgttcccggcaaggaaaaatgcctagaaatcagcttc 120
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgcctcctctgtttgctgagtattcccggcaaggaaaaatgcctagaaatcagcttc 320

                                                                       
Query: 121 gaaatgatttgacttattgctgtgacctgttattttatttccttttacaaccaacagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatgatttgacttattgctgtgacctgttattttatttccttttacaaccaacagctg 380

                                                                       
Query: 181 gctcctctccaggggccctctctaattagtcagtgctcagaactcatttacatgccatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcctctccaggggccctctctaattagtcagtgctcagaactcatttacatgccatta 440

                                                                       
Query: 241 ccaccccagctatggtctccagaaagggaagaaagaaagtaggcagagctcattaaaaag 300
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgccgcagctatggtctccagaaagggaagaaagaaagtaggcagagctcattaaaaag 500

                                                                       
Query: 301 catcttggggcaaatcccagagggctgctctgtctctaggagaactcaccctaaggccac 360
           | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 cgtcttggggcaaatcccagagggctgctctgtctctaggagaactcagcctaaggccac 560

                                                                       
Query: 361 agcaccttctgacaccaaataatagggaagaaaggggtaggagaacaggaggcagcaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaccttctgacaccaaataatagggaagaaaggggtaggagaacaggaggcagcaaaa 620

                                                                       
Query: 421 agctatgtctcttctcatggtgctttaaaataaactatggactctgggagctgagggagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctatgtctcttctcatggtgctttaaaataaactatggactctgggagctgagggagc 680

                                                                       
Query: 481 tcgaaggaacagatgtaggaaaaagcctcttatcttgttaataaatttaaaatagaattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcgaaggaacagatgtaggaaaaagcctcttatcttgttaataaatttaaaatagaattc 740

                                                           
Query: 541 ttttattaatcatatgtgtttattctctaaacttactgtgatcaaacg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttattaatcatatgtgtttattctctaaacttactgtgatcaaacg 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)