BAC Information

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BAC

Clone NameMSMg01-072D24
Chromosome1 (Build37)
Map Location 8,265,142 - 8,265,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072D24.T7 (MSMg01no072_d24.b1)MSMg01-072D24.TJ (MSMg01no072_d24.g1)
ACCAG295840AG295841
length481725
length of high quality
(start - end)
197 (71 - 267)579 (73 - 651)
definitionCHROMAT_FILE: MSMg01no072_d24.b1 PHD_FILE: MSMg01no072_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:55 2005CHROMAT_FILE: MSMg01no072_d24.g1 PHD_FILE: MSMg01no072_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTTAAAANACCCNTTTTTAACCTCATCTAAATTGCGGCGCTATAGA
CTCACTAAGTTCGAGAACCGCGGAATTCATCAGGTTATTACCTTTTCCTT
TCTGTTGTTGGTAGAATTCTTTGCAACAAAAGTTTCTAATATAAACATTT
CCACATAATATCTATNGGAGAGAAAACTACATAAGTGGATAATTTTCAGT
AATCTTTACTGGTCCAATAGTCACTTTTTATAAATATCTTTGGGGTTTCT
TTGTGTGTACTTGTGTGTGCTATGGGGTGTTGTTGTGGCATGGCATGTTT
GCATGGTTCAGTGCAAGTATTTCAAACTAGAGGCTCACGAAAGAAGAACC
AATAATAATCTTCCTTTAAAACTGGGAATAATTATAGGGTATATTTAATG
CACCCTGTTCTTTTAATGGTAGAATTGTTTTCCCAAAGGTTTAAAGTCAT
TGGAAGTTTCCTTTTGGTTGAAGGGGCAAAA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGGGTCAGTTATGTACATATCATCTG
CAAATAGTGATATTTTGACTTCTTCCTTTCCATTTGTATTTCTTTGATCT
TCTTCTGTTGTCTAATTGCTCTGGCTAGTAGTTCAAGTACTATACAGAAT
AGGTAGGGAGAGAGTGGGCAGCCTTTTCTTGTCCCTGATATAAGTGGGAT
TGTTTCACATTTCTGTCCATTTAGTTTGATGTTGGCTACTGGTTTGCTGT
ATATTTCTTTTATGATGTTTAGTTATGGGCCTTGGATTCCTGATCTTTCC
AAGACTTTTATCATGAACAGATGTTGGATTTTGTCAAATGCTTTCTGAAC
ATCTAATGAGATGATCATATAGTTTTTGCATTTCAGTTTGTTTATATAGT
AGATTATGTTGATGGATTTCCATATATTAAATCATCCTTGCATCTCTGGG
ATGAAGACTACTTGGTCATGATGAGTGATCATTTTGATGTGTTCTTGGAT
TCAATTTGTAAATATTTTATTGAATATTATTGTATTGATATTCATGAGGG
AAATTGGTCTGAGGTTCTTTTTCTTTGTTGGGTCTTTCTGTGGTTTTGGT
ATCAGAGTATTTCAGGCTTCATAGAAGACATTGGGAAGAGTTCCTTCTGT
TTCTATTTTGTGGAATAGTTTGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_d24.b1 MSMg01no072_d24.b1 CHROMAT_FILE:
MSMg01no072_d24.b1 PHD_FILE: MSMg01no072_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:55 2005
         (197 letters)



>mm_chr1_8264940_8265527
          Length = 588

 Score =  288 bits (149), Expect = 1e-82
 Identities = 183/195 (93%), Gaps = 9/195 (4%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcatcaggttattaccttttcctttctgttgttggtagaattctttgcaacaaaag 62
           ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 gaattcatcaggttattaatttttcctttctgttgttggtagaattttttgcaacaaaag 262

                                                                       
Query: 63  tttctaatataaacatttccacataatatctatnggagagaaaactacataagtggataa 122
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 263 tttctaatataaacatttccacataatatctat-ggagagaaaactacataagtg-ataa 320

                                                                       
Query: 123 ttttcagtaatctttactggtccaatagtcactttttataaatatctttggggtttcttt 182
           |||||||||||||| |||| |||||||| || ||||||||||||| |||||  |||||||
Sbjct: 321 ttttcagtaatctt-actg-tccaatag-ca-tttttataaatat-tttgg--tttcttt 373

                          
Query: 183 gtgtgtacttgtgtg 197
           |||||||||||||||
Sbjct: 374 gtgtgtacttgtgtg 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 588
Length adjustment: 8
Effective length of query: 189
Effective length of database: 580
Effective search space:   109620
Effective search space used:   109620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)