CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGTAGGAAGCCTAATGTTGGCTGAGAAAGATTAGATGAAACAAAAG
CTGCCTGTATTTTTTTTTTTTTTAACCAGGGAGCTGCTGTTTAAGTAAAA
ATGAGAAATCAATATTTTCAATTTTATTTCTTTGCAGAGTAAAAGTGAGC
AAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATC
TTGGCCTATGATGAAACAACTCAAAAAATGTGATTGTTTTTGCTTCTCTA
CATGGGCTGGCCATCAGCATTGTCAAGTGTAATCTTTTCTATTATTAGAG
AATCATCCCATGGTTGTTCAAACAAGCAACCCATGTAATAATAACCCTCT
CTTTAAAAGCATTGCCTTAAAGCAGGACCAGGTACTGCTCTTGTAGAGGA
CCAAGGCTCAGTTTCTAGTACTCACATCAGGAGTCAAACAACTGCTTGTA
ATTTCAGCCCTAGGGAAATCTGATGCTCTTTGTTGGCCTTCATGGGTATG
TGCATGCACATGCAACTATAGACACAGATACCTATATAAATACAGATACT
TCTTTAAATTGTTAACCCCACTTCATTCACATACACTGTACACTGACCTA
GTTTCTACACATACTCTTAAGACATTAGAAAAGCTTATTACTCAGGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGAT
ATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATCTGTTAC

Query= MSMg01no072_e16.b1 MSMg01no072_e16.b1 CHROMAT_FILE:
MSMg01no072_e16.b1 PHD_FILE: MSMg01no072_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:58 2005
         (505 letters)



>mm_chr1_125281142_125282046
          Length = 905

 Score =  915 bits (473), Expect = 0.0
 Identities = 494/501 (98%), Gaps = 2/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgtaggaagcctaatgttggctgagaaag-attagatgaaacaaaagctgcc 63
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 590 gaatttagtgtaggaagcctaatgttggctgagaaagaattagatgaaacaaaagctgcc 531

                                                                       
Query: 64  tgtattttttttttttttaaccagggagctgctgtttaagtaaaaatgagaaatcaatat 123
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgta-cttttttttttttaaccagggagctgctgtttaagtaaaaatgagaaatcaatat 472

                                                                       
Query: 124 tttcaattttatttctttgcagagtaaaagtgagcaaattacggtgcggcatctgacatc 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 471 tttcaattttatttctttgcagagtaaaagcgagcaaattacggtgcggcatctgacatc 412

                                                                       
Query: 184 aggaaactgggaagtgataaggatcttggcctatgatgaaacaactcaaaaaatgtgatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aggaaactgggaagtgataaggatcttggcctatgatgaaacaactcaaaaaatgtgatt 352

                                                                       
Query: 244 gtttttgcttctctacatgggctggccatcagcattgtcaagtgtaatcttttctattat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtttttgcttctctacatgggctggccatcagcattgtcaagtgtaatcttttctattat 292

                                                                       
Query: 304 tagagaatcatcccatggttgttcaaacaagcaacccatgtaataataaccctctcttta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tagagaatcatcccatggttgttcaaacaagcaacccatgtaataataaccctctcttta 232

                                                                       
Query: 364 aaagcattgccttaaagcaggaccaggtactgctcttgtagaggaccaaggctcagtttc 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aaagcattgtcttaaagcaggaccaggtactgctcttgtagaggaccaaggctcagtttc 172

                                                                       
Query: 424 tagtactcacatcaggagtcaaacaactgcttgtaatttcagccctagggaaatctgatg 483
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tagtactcacatcaggagtctaacaactgcttgtaatttcagccctagggaaatctgatg 112

                                
Query: 484 ctctttgttggccttcatggg 504
           |||||||||||||||||||||
Sbjct: 111 ctctttgttggccttcatggg 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)