BAC Information

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BAC

Clone NameMSMg01-072I08
Chromosome1 (Build37)
Map Location 128,317,052 - 128,317,363
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072I08.T7 (MSMg01no072_i08.b1)MSMg01-072I08.TJ (MSMg01no072_i08.g1)
ACCAG296045AG296046
length687689
length of high quality
(start - end)
---402 (71 - 472)
definitionCHROMAT_FILE: MSMg01no072_i08.b1 PHD_FILE: MSMg01no072_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:17 2005CHROMAT_FILE: MSMg01no072_i08.g1 PHD_FILE: MSMg01no072_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGAGATTCCTTTACATTTTTTCTTAGTTTGTGTGCTATGACTT
CTGTATTATGCACCGTCCAGTATGTTAACTGCGACTATAGCCATACAATT
GCCTCTAATGCTTTGCGAAAACATCGCACCATTATGCTGGTTCTCAATAA
AATTAGACTCTTTGAAGTTTTTCTAGAATCCCAGGATTAACTGAACAAAG
AACTTATCAACATAAAATGTTCTTCCATACACCAAGTTATTTCTTATCAC
CTCTGTAAGACCATTTGCCTATACGTGCTCTCTTCCTTTGATGAGGGAGT
CTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA
NCATGCTGTGGGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATACTCACCATGAATTTTCTCACTTCAAA
AGTAGAGAGAATTATTTTTGTCTGGCCCTAAGGCTTTCGGGGGGGTTAGG
AGAGGACATGTGGACAGTGCTTAGAGCGCATTGGGAAGATGACACAGTCA
GTAAAGTGCTTACTATAGAACAACGAGGACCTGAGTTCAGACCTTCAGCA
TGCACATATGGGCTGTAATGTTATTGCTGGGGATAGGGTAGGTTTGGGGA
ATCCAGTAAAGGTCAGTTGGTGATCTATAGATTCAGTGACAAGGATGTTT
TAGAGACAGACCCTGTTCCAAAAATTACAGTGAAGAGTATTGAGAGAAAA
ACATCTGCCATCAAACTCTGGCCTCCAAAAGCATATGTACACATATATAC
TTGTGCCTACACACACACACACACACACACACACACACACACACTTTCAC
ACTCTCCCACACTCTTTAATAGGATAATATAAAAACCCACAGTCTGTAAA
TCTTAGCACCTTAGAAAGTTCATGAATAGCAAGAAAACATTTGAGCTTCC
CTTAGTTTTAATTTTCCAAGCTTTATTCTAATGTTGATTCATGTTAGTGT
TGCTTAATCTCCGGGCAGAACCAGTTAATCCTGTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_i08.g1 MSMg01no072_i08.g1 CHROMAT_FILE:
MSMg01no072_i08.g1 PHD_FILE: MSMg01no072_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:18 2005
         (402 letters)



>mm_chr1_128317052_128317854
          Length = 803

 Score =  542 bits (280), Expect = e-158
 Identities = 304/312 (97%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catactcaccatgaattttctcacttcaaaagtagagagaattatttttgtctggcccta 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 312 catactcaccatgaattttctcatttcaaaagtagagagaattatttttgtctggcccta 253

                                                                       
Query: 61  aggctttc-gggggggttaggagaggacatgtggacagtgcttagagcgcattgggaaga 119
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 252 aggctttcggggggggttaggagaggacatgtggacagtgattagagcgcattgggaaga 193

                                                                       
Query: 120 tgacacagtcagtaaagtgcttactatagaacaacgaggacctgagttcagaccttcagc 179
           |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgatgcagtcagtaaagtacttactatagaacaacgaggacctgagttcagaccttcagc 133

                                                                       
Query: 180 atgcacatatgggctgtaatgttattgctggggatagggtaggtttggggaatccagtaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 atgcacatatgggctgtaatgttattgctggggatagggtaggtttggggaatccagtaa 73

                                                                       
Query: 240 aggtcagttggtgatctatagattcagtgacaaggatgttttagagacagaccctgttcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 72  aggtcagttggtgatctatagattcagtgacaaggatgttttagagttagaccctgttcc 13

                       
Query: 300 aaaaattacagt 311
           ||||||||||||
Sbjct: 12  aaaaattacagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 803
Length adjustment: 9
Effective length of query: 393
Effective length of database: 794
Effective search space:   312042
Effective search space used:   312042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)