Query= MSMg01no072_i09.b1 MSMg01no072_i09.b1 CHROMAT_FILE:
MSMg01no072_i09.b1 PHD_FILE: MSMg01no072_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:18 2005
(506 letters)
>mm_chr1_72019171_72020076
Length = 906
Score = 870 bits (450), Expect = 0.0
Identities = 490/504 (97%), Gaps = 3/504 (0%)
Strand = Plus / Minus
Query: 6 ggaattctttgaac-tgcttataatcgctactttggatcctttgtcttaaaatttgtcca 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaattctttgaacatgtttataatcgctactttggatcctttgtcttaaaatttgtcca 717
Query: 65 agtcattccccacgggacccatctctaatgggctggtaatttgggatgagggcatgttgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agtcattccccacgggacccatctctaatgggctggtaatttgggatgagggcatgttgt 657
Query: 125 ttgttttcatgttacttaatgtttttgccacagggcctaggtacctggagttaggttgtt 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 656 ttgttttcatgttacttaatgtttttgccacagggcctgggtacctggagttaggttgtt 597
Query: 185 tgagttgtctttttctatgtctctataggccacttaaacctgagataaagtggtgggtta 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgagttgtctttttctaagtctctataggccacttaaacctgagataaagtggtgggtta 537
Query: 245 gacaggttagaagcaggtctcaaagaggtagagccaaggaaatgatatctcttacaagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gacaggttagaagcaggtctcaaagaggtagagccaaggaaatgatatctcttacaagag 477
Query: 305 ccatgagaagcaggtggcccagtaggttctccaaggaggcagaaggacactggcagttac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 476 ccatgagaagcaggtggcccagtaggttctccaaggaggcagaaggacactggcagtcac 417
Query: 365 cggaagtatggcgaaggctgtggcagctcctcttccttcttctcctcctcctttttcttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cggaagtatggcgaaggctgtggcagctcctcttccttcttctcctcctcctttttcttc 357
Query: 425 tttccttgtatcatccttctcttctcttctcttctcttct--tctcttctcttctcttct 482
|||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||
Sbjct: 356 tttccttgtatcatccttctcttctcttctcttctcttctcttctcgtctcgtctcgtct 297
Query: 483 cttctcttctcttctcttctcttc 506
| |||| |||| |||| |||||||
Sbjct: 296 cgtctcgtctcgtctcgtctcttc 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_i09.g1 MSMg01no072_i09.g1 CHROMAT_FILE:
MSMg01no072_i09.g1 PHD_FILE: MSMg01no072_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:18 2005
(448 letters)
>mm_chr1_71877162_71878009
Length = 848
Score = 814 bits (421), Expect = 0.0
Identities = 442/449 (98%), Gaps = 3/449 (0%)
Strand = Plus / Plus
Query: 1 tttcttcttt-aatattatgttctcactctcttctgggcagtagtgatgctatttagtgt 59
|||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tttctt-tttcaatattatgttctcactctcttctgggcagtagtgatgctatatagtgt 259
Query: 60 tttgaacaaatgaaaaaacaggtgagaggaaatacgttgacccgccatgtctctgaggga 119
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 260 tttgaacaaatgaaaaaacaggtgagaggaaatacattgacctgccatgtctctgaggga 319
Query: 120 tgtataaccagtaacagttagttatgttaacattttaatactctgttcaaaggcaagtac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgtataaccagtaacagttagttatgttaacattttaatactctgttcaaaggcaagtac 379
Query: 180 gaccagtcaaggctaatggatgtcagaacggtgtaaccttcagagaaattgactgggaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaccagtcaaggctaatggatgtcagaacggtgtaaccttcagagaaattgactgggaaa 439
Query: 240 aactacaaaggacccttcagggaaacagaaaattgttattttttttaatctgagtattgg 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 aactacaaaggacccttcagggaaacagaaaattgttattttttt-aatctgagtattgg 498
Query: 300 tttggtgaggatatgggtatgtcaaaatacaccgagctacattcttccaaaatggaccct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttggtgaggatatgggtatgtcaaaatacaccgagctacattcttccaaaatggaccct 558
Query: 360 aatggaaaaaaagaaaatgtacttttatctcatcctaaaatcaagactatatacatttta 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 aatggaaaaaaagaaaatgtacttttatctcatcctaaaaccaagactatatacatttta 618
Query: 420 ccaattgtttgctcaaaaagtctgagttc 448
|||||||||||||||||||||||||||||
Sbjct: 619 ccaattgtttgctcaaaaagtctgagttc 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
