TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTCCTTATCACTTATGAAGTGGAGGGGGAGGAGAAAAAGTCAACTTGT
AGGTTTTCCAAGAGAGTGGGCTTGGATTCCCCAGATAAGGTCAAAGAAGG
GGAAAGTTTGCTGGAAAAGGGAATCCTCAGAGAAGCAATCCAGACATGGT
AGACTGTGACATTAAGTAGCAGAGTTTCCAACATGCCAGATGCTTTAAAT
AGTATTGCTGAATATAAGAAACTAATTTATTAAAATGGAGTGTGTTGGTG
AAAAGAGCTAAGGTTGTACTTATGTAGAACTCTTTCTTCCTCTAGGTTTC
TTGAATCACAGAGATGTTAATTGATGAGTAAGCATCATCAATTAACATTC
AGTGTGATATATGCTCATTCAAATGTGATATATGACACTGGCATAATGAA
GAAATAAAAGAGAATATATTTCCATGTGGCACTTTAGAATGCATTACCAT
ATGTACCATTAGCTTCTTAGTGACAGCTTTGGCCTTTTTTCTAGCACATT
GCTAGATATCTTCAGGGAGGATGTATTCTGTGCATTCTCTAGATTGAGAC
ATGATAGATACTGACAGTAGGGAGGTTTCTGTAACTTAAAGGACAAATCC
ACTCTAATAGTTTAAGCTTTCCAAACTTTAACCTATTTAATTGACACATT
AAACTTTTGTCAAGCTTCTACATTCTGTTTAGC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAGAGTACTTTTTGTTTCTATTTTGTGA
AATAGTTTGAGGAGAGTTGGAATTAGGTCTTCTTTGAAGGTCTGATAGAA
CTCTGCACTAAACCTGTCTGGTACTGGGCTTTTTTTGGTTGGGAGACTAT
TAATGATTGATTCTATTTCTTGAGGGGAAGTGGGGCTGTTTAGATCTTTA
ATCTGATCCTGATTTAACTTTATTACCTGATATCTGTCTAGGAAGTTGTC
CATTTCATCTAGGTTTTCCAGCTTTGTTGAGTATAGCCTTTTGTAGTTGG
ATCTGATGATGTTTTGGATTTCCTCAGGTTCTGTTGTTATGTCTCCTTTT
TCATTTCTGATTTTGTTAATTAGAATACTGTCCCTGTGCCCTCTAGTAAG
TCTGATTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAGCTCC
TTGTTTAGTTGATTCTTTGAATAGTTCTTTTTGTTTCCCCTTGGTTGATT
TCAGCTATGTGTTTGATTATTTCCTCCCTTCTACTCCTCTTGGGTGGATA
TGCTTCTTTTGTCAAGAGAGCTTCTAGGTGTGCTCTCAAGCTGCTAGCGT
ATGCTCTCTCAAGTTTCTTTTTGGAGACAATCTTAGTCCTTTTAGGACTG
CTTTCATTTTGGCCCATAAATTTGGGTA

Query= MSMg01no072_l12.b1 MSMg01no072_l12.b1 CHROMAT_FILE:
MSMg01no072_l12.b1 PHD_FILE: MSMg01no072_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:33 2005
         (587 letters)



>mm_chr1_143959857_143960843
          Length = 987

 Score = 1085 bits (561), Expect = 0.0
 Identities = 579/585 (98%), Gaps = 1/585 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtccttatcacttatgaagtggagggggaggagaaaaag-tcaacttgtagg 62
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 977 ggaattctgtccttatcacttatgaagtggagggggaggagaaaaagttcgacttgtagg 918

                                                                       
Query: 63  ttttccaagagagtgggcttggattccccagataaggtcaaagaaggggaaagtttgctg 122
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 917 ttttccaagagagtgggcttggactccccagataaggtcaaagaaggggaaagtttgctg 858

                                                                       
Query: 123 gaaaagggaatcctcagagaagcaatccagacatggtagactgtgacattaagtagcaga 182
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaaaagggaatcctcagaggagcaatccagacatggtagactgtgacattaagtagcaga 798

                                                                       
Query: 183 gtttccaacatgccagatgctttaaatagtattgctgaatataagaaactaatttattaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gtttccaacatgccagatgctttaaatagtattgctgaatataagaaactaatttattaa 738

                                                                       
Query: 243 aatggagtgtgttggtgaaaagagctaaggttgtacttatgtagaactctttcttcctct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aatggagtgtgttggtgaaaagagctaaggttgtacttatgtagaactctttcttcctct 678

                                                                       
Query: 303 aggtttcttgaatcacagagatgttaattgatgagtaagcatcatcaattaacattcagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aggtttcttgaatcacagagatgttaattgatgagtaagcatcatcaattaacattcagt 618

                                                                       
Query: 363 gtgatatatgctcattcaaatgtgatatatgacactggcataatgaagaaataaaagaga 422
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 617 gtgatatatgctcattcaaatgtgatatatgacactggcataataaagaaataaaagaga 558

                                                                       
Query: 423 atatatttccatgtggcactttagaatgcattaccatatgtaccattagcttcttagtga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atatatttccatgtggcactttagaatgcattaccatatgtaccattagcttcttagtga 498

                                                                       
Query: 483 cagctttggccttttttctagcacattgctagatatcttcagggaggatgtattctgtgc 542
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 497 cagctttggccttttttctagcgcattgctagatatcttcagggaggatgtattctgtgc 438

                                                        
Query: 543 attctctagattgagacatgatagatactgacagtagggaggttt 587
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attctctagattgagacatgatagatactgacagtagggaggttt 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)