BAC Information

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BAC

Clone NameMSMg01-072O14
Chromosome1 (Build37)
Map Location 84,102,715 - 84,103,127
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream geneCcl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072O14.T7 (MSMg01no072_o14.b1)MSMg01-072O14.TJ (MSMg01no072_o14.g1)
ACCAG296338AG296339
length699702
length of high quality
(start - end)
423 (43 - 465)341 (70 - 410)
definitionCHROMAT_FILE: MSMg01no072_o14.b1 PHD_FILE: MSMg01no072_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:49 2005CHROMAT_FILE: MSMg01no072_o14.g1 PHD_FILE: MSMg01no072_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCTATGCTTACCAAGCTGCCTCAAGCCACGGTAATTTACTTGCCTCAAC
CTCCCAAGTGCTGGATTACAGGCAGTAGCCAAACACACTTGGTAGACTTT
TGTTCTTATATTTTAACAAAGTTTTTAAAGACTTAAATTTATTATAGTTT
TTATCATCATACGGTTACTAAGACCAACAAGTCTAGATATTAGTGAACTT
CCTTGTGGCATTTCATTACTAGAGTTCTCACTGCTCAGACTTGACCATAT
GACGTAAACTAAACATTTTGTACAGTCTATACCATAGCATCATAACACCT
AATTGATAAACTATATTTTGTTTTCTAAGAACTGTGTTAGTCAGTTTTGT
AACTGAAAACTACTCAGTTGTTCTAGTTCCCTTTCTGTCGCTGTGATTTA
AAAAAAAAAAAAACAAAGCATGATACAAAGCAGCTCTGCCAAGAAAGGAT
TTAGCTTGTTTTGCGTTTTATATTACAGTTCAGTATTGTAGAGAAGTCAA
AGCACTGTATCCACGACTACTCGCTTTCATCTAGCTTCTCCTGGCTTACC
TAATTTGGTGCTCTGTGCCTAGGGTTCAGCGCCGCTCATACTGTGTTGTG
TTTTCCTGTCTCATTCTCCAAGAACTGTCCTAAATATATTTTGCTTTGC
ATGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCCCATATACAGACACCAAGCCCAGACACT
ATTGCTGATGCCAAGAAGTGCTTGCTGACAGGAGCCTGATATTGCTGTCT
CCTGAGAGGCTTTGCCAGAGCTTGACAAATACAGATGTGGATGCTCACAG
CCAAACACTGGACTGAGAACTGTGTCCCCAAAGAAGTAGTTAGAGAAAGA
ACTAAAGGAGCTGAAGGGGTTTGCAAGCTGTATGAAGAACAACAATATCA
ACCAACCAGATCCCCCAGATCTCCCAGGGACTAAACCACCAACCAAAGAG
TATACATTTAGGGATCCATGGCTCCAGCTGCATATGTAGCAGAGGATGGT
CTTATCTGGCATCAATGGTGGAGGTGCCTTTGATCCTGTGAAGGCTAGAT
GCCCCAATGTAGGGGAATGCCAGGGCAGTGAGGTAGGAGTGGTGGGTGGA
GTATCCTCATAGAACCTTTTGGAGGAGAGATGGGATAGGATGATTGCCGC
TTTTTTTTTCTTTTTTCTCAACTCTCCCATCTCTCTCTCCCTCTTTCTCC
CTTCTCTTCCCTCCCCCCTCTTTTTCTTTCTATTTCCTTTCTTCTTTTTT
TTTTTCCTTCCCTCCTCTCTCACACTTCTTCTCTCTCCATTCCTTTTCTT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_o14.b1 MSMg01no072_o14.b1 CHROMAT_FILE:
MSMg01no072_o14.b1 PHD_FILE: MSMg01no072_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:49 2005
         (423 letters)



>mm_chr1_84102404_84103226
          Length = 823

 Score =  716 bits (370), Expect = 0.0
 Identities = 405/420 (96%), Gaps = 8/420 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccctatgcttaccaagctgcctcaagccacggtaatttacttgcctcaacctcc 62
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggaattccctatgcagacaaagctgcctcaagccacggtaatttacttgcctcaacctcc 665

                                                                       
Query: 63  caagtgctggattacaggcagtagccaaacacacttggtagacttttgttcttatatttt 122
           ||||||||||||||||||||||||||||||||||||||     |||  ||||||||||||
Sbjct: 664 caagtgctggattacaggcagtagccaaacacacttgg-----tttcattcttatatttt 610

                                                                       
Query: 123 aacaaagtttttaaagacttaaatttattatagtttttatcatcatacggttactaagac 182
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 609 aacaaagtttttaaagaattaaatttattatagtttttatcattatacggttactaagac 550

                                                                       
Query: 183 caacaagtctagatattagtgaacttccttgtggcatttcattactagagttctcactgc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 caacaagtctagatattagtgaacttccttgtggcatttcattactagagttctcactgc 490

                                                                       
Query: 243 tcagacttgaccatatgacgtaaactaaacattttgtacagtctataccatagcatcata 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcagacttgaccatatgacgtaaactaaacattttgtacagtctataccatagcatcata 430

                                                                       
Query: 303 acacctaattgataaactatattttgttttctaagaactgtgttagtcagttttgtaact 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acacctaattgataaactatattttgttttctaagaactgtgttagtcagttttgtaact 370

                                                                       
Query: 363 g-aaaactactcagttgttctagttccctttctgtcgctgtgatttaaaaaaaaaaaaaa 421
           | |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 369 gaaaaactactcagttgttctagttccctttctgtcgctgtga--taaaaaaaaaaaaaa 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)