BAC Information

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BAC

Clone NameMSMg01-072P24
Chromosome1 (Build37)
Map Location 125,620,317 - 125,620,832
singlet/doubletsinglet
Overlap geneDpp10
Upstream geneLOC666983
Downstream geneLOC666998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072P24.T7 (MSMg01no072_p24.b1)MSMg01-072P24.TJ (MSMg01no072_p24.g1)
ACCAG296405AG296406
length7251,497
length of high quality
(start - end)
519 (43 - 561)---
definitionCHROMAT_FILE: MSMg01no072_p24.b1 PHD_FILE: MSMg01no072_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:56 2005CHROMAT_FILE: MSMg01no072_p24.g1 PHD_FILE: MSMg01no072_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCAGTCTCTGCCACCCATATTGCCATAGGAATGCTTTCATGGCAGAC
ATGTGCTAAGGGTGGCTGGATTTACATGAATTCTGAGGATCTGACTTGGC
TCCTAATGCACGTGTGGCAAGTGTTTCATTCACTGAGCCATTTCCCAAAC
TCAATCACAAAGTCAATCTATGAAAGTGTACCAGTCTAAGTGAAGACTTT
GAAACTTTGGCTTCTATTTAAACTTAAAAGACCACCCTTTGCTTTTCTCT
TAGGTGTTAGGAGTTTCAGTTGCTTGAAATTTGAAAGATTAAAGAATGCA
TTTCAAAGCATGCATGTGTGTAGAAGGACTGCCAAGAACAGGGGCCAACC
CAGCCTTTCAGTGAAGGGAAGCTCATTCATCATTCTGTCTCTATTCCGTC
CTTGTCCAGTTTCATCATGGACCAGGGCTTCATGGCACAGAGAGAATCCT
GGGCATCCAAACACGGCACATGAACAAGCAGAAAGTGAAGTGCTGGAAAG
CATAAATAGACTTTCCACCCTGGGCATATATGAGAGGTTTAAGCTCCATT
ATCTGTAATTGCAATTCAGAGTAGAAGAATACTGTCGAGATGAAACATGG
TTCGAATGGCTTTCTGTCTTAGTATGGGCCACACTCTGTCACATTCCATC
ATGGTATACGGGAGCATTTTATATT
TCCAATAATATATATATAATTAAACTATTACATCACTANACAAAACATAC
AACAAACATGCTCACACTACCTAANTCGAGCGGAGAGGGGAGGNANNACT
NNACAANAATTAATAAATATATATTTCTCCCCACCANAAACAANGATTAT
GACAACACACGATATTAAAATAATAATNATATAAATATTTTTACTATATT
ATCAATAATATCTATACTCTATCACTACACCCTATATTATATTACTCTTC
TCTCATACCTTNACCACCATATATNCTATTCGTACTATTACTATNACATA
AACACTTATCATCTNCTNCNCTATATATTCTCTGATTCNACACACTTAAT
ATGTGAGCTGTTGTTTACCGCGCGGTCTGTTGATGGTGCTCGTGCTNCTT
CCTCGCAATTCCGTACTCATATTTTTATCTCTCTAACTAACTATTCTCTC
TATCATTTATATTNCTTGATTGCATTATCCAATATTACATACTTATCTTC
ATCTACACATTCACTGCGTCAAATTGNGTATTATTCAAATATTACGTGTA
GTAATAGAACGGAACATGAGATAAACGCACCGGTACTGTGAAGTCACCTA
TCATGTAGAGATATTATGATGATGGAGACGAGATGAAGCAAGCAGGATGG
ATCCACGTCTATTACATCTGTANGAGAGGCGCGGCAGAGTAGAAGAATAT
CGTACGATCGAGATATAATANAATATGATTTGAATNCATATTCGTCACAC
GTATCGATATGTGCATGCTAGTCGTTATAGTTATGTTATTTGGATGACGG
TGTTACTGTCGCCTCATCACCGTCTGCAGATCAGACGCAGGCACGGCACA
GATACACGCTCGAATCTCATCTCTATACACGAATCATACATCATGCNCAT
CAGACCACTTACNCAGCCATACGCACGATCCAGCTAGTACAGCAGAGAGT
ATCTTAGTATCTGCAGCTCTGCTCATACNCACTCTGGTCACACTCGAATC
ACCAGATACATTGCAATTCGTGCGATAGCAAAAGCGTACATGACACTTGT
ATATGAACATAGCANTGCAGTATAACTATCAGCGGTGTAGCTGTCGAACT
GTGTAGTGTGNTTGCAGTATTAGAAGTGCGCTACTCACTTGTCGCAGCAT
GTAATACATGTGCTGTCATAGATGTACTCGCAGCAGACGTACTGAGCATA
TACGTACATGAAGCATTATATCACACTTTATGATGATCAACAGAATCAGT
AACATAGCGAACTCGAGTCNTGACGCGAAGACGAGAGTACTGTAGATATA
TAGAATATATACACTAACCCCACGGAGTATGACATGACAACGACGAACCA
TAAGGTCGCTGATGTCTAATCGATGATATATGATGAACTAGACCGCGAGG
CACTACTTGTATATCTACGAGAACCAATGTAACGTCCAGAGCGTCACGCN
GTACGACTATACACCACANCAGCGCGACACTATACTATCTCATCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_p24.b1 MSMg01no072_p24.b1 CHROMAT_FILE:
MSMg01no072_p24.b1 PHD_FILE: MSMg01no072_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:56 2005
         (519 letters)



>mm_chr1_125619957_125620875
          Length = 919

 Score =  959 bits (496), Expect = 0.0
 Identities = 511/516 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccagtctctgccacccatattgccataggaatgctttcatggcagacatgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ggaattctccagtctctgccacccatattgccataggaatgctttcatggcagacatgtg 817

                                                                       
Query: 64  ctaagggtggctggatttacatgaattctgaggatctgacttggctcctaatgcacgtgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ctaagggtggctggatttacatgaattctgaggatctgacttggctcctaatgcacgtgt 757

                                                                       
Query: 124 ggcaagtgtttcattcactgagccatttcccaaactcaatcacaaagtcaatctatgaaa 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 756 ggcaagtgtttcattcactgagccatttcccaaactcaatcacaaagtcaatctacaaaa 697

                                                                       
Query: 184 gtgtaccagtctaagtgaagactttgaaactttggcttctatttaaacttaaaagaccac 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gtgtaccagtctaattgaagactttgaaactttggcttctatttaaacttaaaagaccac 637

                                                                       
Query: 244 cctttgcttttctcttaggtgttaggagtttcagttgcttgaaatttgaaagattaaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cctttgcttttctcttaggtgttaggagtttcagttgcttgaaatttgaaagattaaaga 577

                                                                       
Query: 304 atgcatttcaaagcatgcatgtgtgtagaaggactgccaagaacaggggccaacccagcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 576 atgcatttcaaagcatgcatgtgtgtagaaggactgccaagaacaggggtcaacccagcc 517

                                                                       
Query: 364 tttcagtgaagggaagctcattcatcattctgtctctattccgtccttgtccagtttcat 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tttcagtaaagggaagctcattcatcattctgtctctattccgtccttgtccagtttcat 457

                                                                       
Query: 424 catggaccagggcttcatggcacagagagaatcctgggcatccaaacacggcacatgaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 catggaccagggcttcatggcacagagagaatcctgggcatccaaacacggcacatgaac 397

                                               
Query: 484 aagcagaaagtgaagtgctggaaagcataaatagac 519
           ||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagcagaaagtgaagtgctggaaagcataaatagac 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)