BAC Information

Click to search

BAC

Clone NameMSMg01-073F04
Chromosome1 (Build37)
Map Location 184,771,321 - 184,771,619
singlet/doubletsinglet
Overlap geneSusd4
Upstream geneLbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik
Downstream geneTlr5, EG666649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073F04.T7 (MSMg01no073_f04.b1)MSMg01-073F04.TJ (MSMg01no073_f04.g1)
ACCAG296650AG296651
length684937
length of high quality
(start - end)
301 (51 - 351)---
definitionCHROMAT_FILE: MSMg01no073_f04.b1 PHD_FILE: MSMg01no073_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:21 2005CHROMAT_FILE: MSMg01no073_f04.g1 PHD_FILE: MSMg01no073_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGAAGATGCGTGTAGGTGGTTACCTCACAATGCCACCCA
GATGGAGACTTCCCCTCTGTACTTGCGGGCCCCATGGTGAGGCTAGTGAA
CCTTTGCCTGTGGCTATCTGGCTGTCATATTGCCAGGGGGGTAAGAGATT
GTTTCTGCCACTCTTTACCGGATAGGCCTCTGCCTCGGCTGACCTCATTT
CTCTAGAAATTTTTTCCCCTTTCAAGTCATGTTCACATTTAAGAAGAGAA
ATTCTTCAAGAACAAAAGCCAAGTTCACACAGGAACAACTAGGGAGGGCA
CATGGTAGAATGTTATCTTCTGTCCACATCAGTGAGACCTGACTTTGGCC
CTGGTGACTGGCAGGCGTGCCCTTCTGCACTGTCCTATCTTATATGATGA
CTTCTTGCATGTATCTTAGGGGAAGACATGGTCATTCTCGCCCATGTGGT
CAGAGGTTGCCGTTTTTGATTTCTCATGTCTTATTGCAACTTCGTGTAGA
CCTCTATGTGATTGGAACACCTCCTTGAAATATTTGTCTGCCCCCTCCCC
CTTTTTTCAGCTCTTCCTTCTGCTCTTGCCGCCCCCCCTTTACTTGCCCG
ACCCGCTTTCCTCCCCCCATGATCCCCCTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCTTTTTCCCTTTTTTC
CTTCCTCTTCTCCTCCATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGCCAGAC
ATGGAGGAAGTCCGATGTATGTCTCTCCGTATTATACCTAACAGCTCGCA
TGTCTAAATATGCCTCTCTTATTCTCCGCTCCCTTATTTTTTCTCCCCTT
GCCTTTTCCCTCTCTTTTTTTCCCTTCCCTCTTCCCTTTTTCTCTCTCTC
TTTCCTCCTTTTTTTTCCCTTTCTCCTCCCCCCTTTTTTTTCCCCCTCTT
CTTCCGCTCTCTCTTTTCTCTCTTTCTCTCCTTTCCCTCTCCCCCCTTTT
ACTTCCTTTCCCTTTTTTCCTCTTCCTTCTTCCTTCTCCCTTTTTCTTCC
TTCCCTTTTTCCCTCCTTCCCTTCTTCTTCCCTTCCTCCTTTTTCTTTCT
TTCTTCTCTTTTTCTCCCTTTTCTCCCCTCCCTTCTTTCCCCTCTCCTCC
CTTCCCCTTTACTTTTTCTCTCTCTTCCCCTTCTCCTTCCTCCTCCTCCT
TTCCCATTCTTTTCCCCCTGCCCCTCCCCATATCCCTTCTCTCCCCCTTT
CTCTTCTTTTCCTCCCCCCCCCTCCCTCCTTTCTTACCCTCTTTTTTCCC
TCTCCCCTACCCTTCCATATTCCCTCCTTTTTCTCCTTTTCACCTTCTCT
CCCATCCCCTTTTTCTTCTTCCGTTCTTCCCTCTTTCACTTCCCCTTCTT
CTCCTTTTCTCTTTTACTTCCTCGCCCTTTCCCTTTCTCGCTCTCTTCTT
TTTCCTTCCCCCCTCTCCCTCCTTTCTCTTATTCTTTCTTCCTCCGCGGC
TCCCTCTTCCCCTCTCCTTCTTTTCCGCCACCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_f04.b1 MSMg01no073_f04.b1 CHROMAT_FILE:
MSMg01no073_f04.b1 PHD_FILE: MSMg01no073_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:21 2005
         (301 letters)



>mm_chr1_184771117_184771819
          Length = 703

 Score =  489 bits (253), Expect = e-143
 Identities = 287/299 (95%), Gaps = 2/299 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaagatgcgtgtaggtggttacctcacaatgccacccagatggagacttccc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattcaagaagatgggtgtaggtggttacctcacaatgccacccagatggagacttccc 444

                                                                       
Query: 65  ctctgtacttgcgggccccatggtgaggctagtgaacctttgcctgtggctatctggctg 124
           ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 443 ctctgtacttgtgggccctatggtgaggctagtgaacctttgcctgtggctatccggctg 384

                                                                       
Query: 125 tcatattgcca--ggggggtaagagattgtttctgccactctttaccggataggcctctg 182
           |||| ||||||  ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 383 tcatgttgccaggggggggtaagagattatttctgccactctttaccggataggcctctg 324

                                                                       
Query: 183 cctcggctgacctcatttctctagaaattttttcccctttcaagtcatgttcacatttaa 242
            |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 tctcgcctgacctcatttctctagaaatgttttcccctttcaagtcatgttcacatttaa 264

                                                                      
Query: 243 gaagagaaattcttcaagaacaaaagccaagttcacacaggaacaactagggagggcac 301
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 gaagagaaattcttcaagaacaaaagccaagttcacacaggaacaacaagggagggcac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 703
Length adjustment: 9
Effective length of query: 292
Effective length of database: 694
Effective search space:   202648
Effective search space used:   202648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)