Query= MSMg01no073_m01.b1 MSMg01no073_m01.b1 CHROMAT_FILE:
MSMg01no073_m01.b1 PHD_FILE: MSMg01no073_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:55 2005
(315 letters)
>mm_chr1_151973422_151974132
Length = 711
Score = 547 bits (283), Expect = e-160
Identities = 301/309 (97%), Gaps = 4/309 (1%)
Strand = Plus / Minus
Query: 5 gaattcaacaaaagttccttatgtctttgctgttttgtttttctatattgtctttctatt 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattcaacaaaagttccttatgtctttgctgttttgtttttctatattgtctttct--- 453
Query: 65 aaaggttgtgcttgcctttgtccattttttttaaatgtttttgtttctccctcgtttctc 124
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 452 -aaggttgtgcttggctttgtccatttttttaaaatgtttttgtttctccctcgtttctc 394
Query: 125 aagtttcaagtgtacatttttataactgtctattcctttgaagccaggtctctccttgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagtttcaagtgtacatttttataactgtctattcctttgaagccaggtctctccttgaa 334
Query: 185 ccactccatttttttattaaactgacttcattgatacctctatgtcttaagtcatacaca 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 333 ccactccatttttttattaaactgacttcattgatacctctatgtcttaagtcaaacaca 274
Query: 245 caactaattggatcaacgaattcaaggtgaaagaatatgacaatgtgtgtgagaacctct 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 273 caactaattggatcaacgaattcaaggtgaaagaagatgacaatgtgtgtgagaacctct 214
Query: 305 gagatatga 313
|||||||||
Sbjct: 213 gagatatga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 711
Length adjustment: 9
Effective length of query: 306
Effective length of database: 702
Effective search space: 214812
Effective search space used: 214812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_m01.g1 MSMg01no073_m01.g1 CHROMAT_FILE:
MSMg01no073_m01.g1 PHD_FILE: MSMg01no073_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:55 2005
(467 letters)
>mm_chr1_151854386_151855256
Length = 871
Score = 799 bits (413), Expect = 0.0
Identities = 456/471 (96%), Gaps = 4/471 (0%)
Strand = Plus / Plus
Query: 1 tttccaaaa-gatatcctctgaagataaactaggaatgttttccctctgaccaccctaaa 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccaaaaagatatcctctgaagataaactaggaatgttttccctctgaccaccctaaa 260
Query: 60 ggagaaagggcac-agtcactgcatggtccttatatgtaactccccttagatttataccc 118
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 261 ggagaaagggcaccagtcactgcatggtccttatatgtaactccccttagacttacaccc 320
Query: 119 aaggacagccacttgacatgagtacctttataatatttagctgattgttgattcattttg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggacagccacttgacatgagtacctttataatatttagctgattgttgattcattttg 380
Query: 179 tttcaagatgctgaaacaaaacaaaaaacaaaacatggaaacttacagtggcaggcaacg 238
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tttcaagatgctgaaacaaaacaaaaaacaaaacatggaagcttacagtggcaggcaaca 440
Query: 239 ggaaaggaagaaagcacatcaaaacacatcaagtatttggtactggatgtaatatagtga 298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ggaaaggaagaaagcacatcaaaacacatcaagtatttggtactgggtgtaatatagtga 500
Query: 299 ctct--acagttgatatatttatgattaaaatgaccctaacaggttaaggatatttagac 356
|||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 501 ctctctacagttgatatatttattattaaaatgatcctaacaggttaaggttatttagac 560
Query: 357 cagccactaactctcagtagccaagtatgatctgtccccacctcctgagtgctggggtga 416
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaccacaaactctcagtagccaagtatgatctgtccccacctcctgagtgctggggtga 620
Query: 417 catgcctgtgccaccgtgcctatcttatacagggctgaggatctaacccag 467
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgcatgtgccaccgtgcctatcttatacagggctgaggatctaacccag 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 871
Length adjustment: 10
Effective length of query: 457
Effective length of database: 861
Effective search space: 393477
Effective search space used: 393477
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
