BAC Information

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BAC

Clone NameMSMg01-074B08
Chromosome1 (Build37)
Map Location 15,314,956 - 15,315,174
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074B08.T7 (MSMg01no074_b08.b1)MSMg01-074B08.TJ (MSMg01no074_b08.g1)
ACCAG297222AG297223
length741692
length of high quality
(start - end)
223 (50 - 272)465 (73 - 537)
definitionCHROMAT_FILE: MSMg01no074_b08.b1 PHD_FILE: MSMg01no074_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:21 2005CHROMAT_FILE: MSMg01no074_b08.g1 PHD_FILE: MSMg01no074_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATTTCACCAGAGCCCTGAATGTTAGAGCCCTGTATAGGAA
TTGCAGTAAGGCAGGAAGCTGATAGGGATAGGGACCTAGACTTTGGCCAG
TGAGAAGTCACTGAGAGTTGTGGGTCAGGAATGATCCATCACATATATGT
CTAAGCAGTAATTGTGTTTGTCAAGTAGAGGGTAGGTTGGAATTGGTGAA
GGGAGCGATAATGTGGGAGAGTGNNNCTCCCCCNTCCTCCCTTTTTTTTC
CCCTTCCCCTCCTTTTTTTCTTTTTCCCCTTTTTTTTCCTCTTTTTTCCC
CCCCCCCTTTTTTCTTCCCCCCCCCCCCCTCCTCTCCTCTTCTTTCCCTC
TCCTTGTCCCTGTGGTGTTTCCCCCCCTTTTTGTTTCCTTTTTTCCTTTT
CCCCTTCTTCTCCCTCGCTCGTTCCTTTTCGTTTCTCCCTTTCCTCTTTC
TTTCTATTCTCCCCCTTCCTTTTTGCCTCCTTTATTTTCTTTCCCTTTTC
TCCCCTTTATCCCCCCCTCTCTTTTCGTTCCTATTTCTCCCCTTCCGTCA
TTGTCCCACCCTTTTTTCTTCCTTCTTTTTTTTTCGACCCTTTGCGCCTC
GTTTCGCGCCGTTTTTCTCCCTCCGCTCTTGGATTGGTCGCGTTCCGCTT
TCTCTGCCCCCCCCCGGTGCTAGATGGCATTTATGTATTTG
CAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAAATAT
ATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGGTCTTTTTGTCTAATTGACCATGTCTTTTGCCTTACAG
AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGC
ACAAGCCATTGCTGTTCTGTTTAGGAATTTTCCCCCTGTGCCCATATCTT
CGAGGCTTTTCCCCACTATCTTCTCTATTAATCTCTGTGTCTCTGGTTTT
ATGTGGAGGTCTTTGATCCACTTAGACTTGAGTTTGTACAAGGAGATAAG
AATGGATCAATTCGAATTCTTCACATAATAATCACCAGTTTTGCCAGCAC
TATTTGTTGAAAAGCTGTCTTTTTTCCACTGGATGGGTTTAGTTCTATTG
TCAAAAATCAAGTGACCATAGGTGTGTGGCACCATTTCTGGATCTTCAAT
TTTATTCCCTTCGCCTACCTGTCTGCCGCTGTATCAGTACTTTTTGCATG
TTTCATTTTACTTGCCCCGGTGTAGCGGGTATTGTACGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_b08.b1 MSMg01no074_b08.b1 CHROMAT_FILE:
MSMg01no074_b08.b1 PHD_FILE: MSMg01no074_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:21 2005
         (223 letters)



>mm_chr1_15314752_15315374
          Length = 623

 Score =  400 bits (207), Expect = e-116
 Identities = 216/219 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatttcaccagagccctgaatgttagagccctgtataggaattgcagtaaggca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 423 gaattccatttcaacagagccctgaatgttagagccctgtataggaattacagtaaggca 364

                                                                       
Query: 65  ggaagctgatagggatagggacctagactttggccagtgagaagtcactgagagttgtgg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 363 ggaagctgatagggatagggacctagactttggccagtgagaagtcactgagagctgtgg 304

                                                                       
Query: 125 gtcaggaatgatccatcacatatatgtctaagcagtaattgtgtttgtcaagtagagggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtcaggaatgatccatcacatatatgtctaagcagtaattgtgtttgtcaagtagagggt 244

                                                  
Query: 185 aggttggaattggtgaagggagcgataatgtgggagagt 223
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aggttggaattggtgaagggagcgataatgtgggagagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)