Query= MSMg01no074_b15.b1 MSMg01no074_b15.b1 CHROMAT_FILE:
MSMg01no074_b15.b1 PHD_FILE: MSMg01no074_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:22 2005
(564 letters)
>mm_chr1_82673098_82674061
Length = 964
Score = 948 bits (490), Expect = 0.0
Identities = 544/566 (96%), Gaps = 9/566 (1%)
Strand = Plus / Plus
Query: 4 ggaattccagaagctggatgcccagggcctccaggacctaagggtaaattaatgactata 63
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 203 ggaattccagaagctggatgcccagggcctccaggacctaagggtaaattaacgactata 262
Query: 64 caacataaggttcactgtggatatttcaagctatgattatgaatagtgaataaaataggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caacataaggttcactgtggatatttcaagctatgattatgaatagtgaataaaataggg 322
Query: 124 aatacctaggatacgctgccaaatgatgctttccgagaatctccagaagtcgtgggacaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatacctaggatacgctgccaaatgatgctttccgagaatctccagaagtcgtgggacaa 382
Query: 184 taccaggtgaagagacagaattcacattgatctgtgagataatatctcagtcatactttt 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 383 taccaggtgaagagacagaattcacattgatctgtgagataatgtctcagtcatactttt 442
Query: 244 taactcatttattttgtgtaccatcgaggatgttgttgtggcagtcagaggacaattgca 303
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 443 taactcatttattttgtgtaccatcaaggatggggttgtggcagtcagaggacaattgca 502
Query: 304 aaagaccattctctctttctaccctgcgacccccagggatcaaactcaggtcatcaggct 363
||||||||||||||||||||| | || || |||||||||| ||||||||||||||||||
Sbjct: 503 aaagaccattctctctttctatcatgtgagtcccagggatcgaactcaggtcatcaggct 562
Query: 364 tcatagcacccc----actttatatactgaggcaccacacaggcacatcaatcatgcttt 419
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 tcatagca----ggaaactttatatactgaggcaccacataggcacatcaatcatgcttt 618
Query: 420 taaaaaaaa-aataaaatacctggcccacctggaaggaaattcaccaaaaggtaatagca 478
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaaaaaaataataaaatacctggcccacctggaaggaaattcaccaaaaggtaatagca 678
Query: 479 attctttctgctcataagaaatttttatttaatcctatacttcttaggtttatatatttc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 attctttctgctcataagaaatttttatttaatcctatacttcttaggtttatatatttc 738
Query: 539 tggacttcacatatttttaaataaga 564
||||||||||||||||||||||||||
Sbjct: 739 tggacttcacatatttttaaataaga 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_b15.g1 MSMg01no074_b15.g1 CHROMAT_FILE:
MSMg01no074_b15.g1 PHD_FILE: MSMg01no074_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:22 2005
(299 letters)
>mm_chr1_82836824_82837522
Length = 699
Score = 547 bits (283), Expect = e-160
Identities = 294/298 (98%)
Strand = Plus / Minus
Query: 1 aagataaccagaaaataattgcatctaatcagttccagagtcacctgcaacctttccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aagataaccagaaaataattgcatctaatcagttccagagtcacctgcaacctttccaag 439
Query: 61 tttaatttcacaagaacaaaaattcccatcacaacacagcttaaacagagaggcctagac 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgaaatttcacaagaacaaaaattcccatcacaacacagcttaaacagagaggcctagac 379
Query: 121 atgccatctgagtaatttcaggcggtcacctccatctcctttctcaatattgtcttccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgccatctgagtaatttcaggcggtcacctccatctcctttctcaatattgtcttccca 319
Query: 181 gtccccatttctccagacagataggacacttggnttctgatacagaaatctcatcgagct 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 318 gtccccatttctccagacagataggacacttgggttctgatacagaaatctcatcgagct 259
Query: 241 ccatccttattttgaaccgcacaactcctgattacccttttccagtaaaactttcccc 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccatccttattttgaagcgcacaactcctgattacccttttccagtaaaactttcccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
