BAC Information

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BAC

Clone NameMSMg01-074E02
Chromosome1 (Build37)
Map Location 170,230,047 - 170,230,221
singlet/doubletsinglet
Overlap genePbx1
Upstream geneTmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074E02.T7 (MSMg01no074_e02.b1)MSMg01-074E02.TJ (MSMg01no074_e02.g1)
ACCAG297354AG297355
length915718
length of high quality
(start - end)
---175 (73 - 247)
definitionCHROMAT_FILE: MSMg01no074_e02.b1 PHD_FILE: MSMg01no074_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:34 2005CHROMAT_FILE: MSMg01no074_e02.g1 PHD_FILE: MSMg01no074_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTAAATTTCCCACAGACGCGACTAAACCTCACTGCGACTTATCTTAT
ATCGGTTAACAACGCCAATGTGTTACTCCCACGTAACGAGAAATACAATA
CTTGCATATAGTAATCAGTAAGTCATATATTTAGTTTGTCCTGCTATCTA
ATTACATTCCATTTCTATTCTGCGTACCACTTGCCAACATCGCACACTTG
ATTTCGCTTACTGCTTATAGATGCTCTCGTAAAAACTCTGAGACTTGTTA
TATTATTCTCCCCCTCAATCTATCCTCCATGCTTTTCCAATGATCTCTGC
TGCAGCACCTTTCTCATATAATATATCCCACTATTACTCCCCACTATTAT
CCCGTTTTTTTTTTTCTCTCTCTCCCTCTATTATTATACGCATTCCTATC
ACAACTCTACCATTACACTTCACTCCTCTCTCACCAATATTACACACATA
TATTATATTTCTCTTCCTTGGTTGTCTCCCATCTTCTCCACCACTCTATT
TACTCATTACACTCACTCCCTCTTCTCCTCTTATCCTCACTATCTTATCC
CTCATTTCTATTCTTACAACCCCCCTTTTTTCACACCCCTCCTACTCATT
CTACCGCTTTCATTTTTAAATCCCACTTTTATTATACACCACACCACCTA
TATTTATTTACGTCATCACAGTATTCATACTATACATCCACACCCCTCTT
GTCCTCTCTCTTCCATACTACCCCACACATCCCCCACCCCCCGCGACTTA
TTATATATCTCCTTCTCCTATTCCTCCTCCTGTTATTCCCCGCACCCCCT
TATAATCTCACCCCACTTTTCTACTCCCCAACCCCCCGCGCCCACCTCTC
ACTATATCTCTCTCT
GCTTTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGCAGAGGCTGGAGCTCCCCTGACATGCCCAC
CCCACTTCTTCCTAAGCCAGCCATGCTGGCACACTCTCTCTCACACCGCC
ACAGGGATGCGAGGCCCCCTCAAGAGCTGCCAAGCTCTCTGATATACGGG
CTGCTAATGCAGCATTATTAAGAACACGTTTGTCTCTACTCCTCTAAGTA
TGCGGCTTCCCTGCCTGAAGGAAAGCCCCATACACGTTCCCACAGAGGGA
CCCAGTATAGTGCCCTGTAATTCACAAAGGGAAATCAGCATGCCAGGGGA
TAATCATATCTTCTACCACCCCTCTCTGTCCTGATGTGTTGCGAAAGCCC
ATTACCTCCCGTCCTATTACCACATTCATTTTCTTACATGCGTGTGGATT
ATTTCCCTCTGATCCTTCTGTTCCTCATAACTACCTTTTCTCTTTCTTTT
CAATTCCTCTATCATTACCTTTTTAGATACTGACAGTATATCGAACTTAT
TTGTTTTTATTATTTAAATTTCACCCGTTCCCTCTTCTTTTTACACTTTT
CTTTCTTTTTCATTTTACATTTCCTCCTTTGTGCCTATTTCCTCTTCCCT
CTTTACCCCGCTCCTCCCCCCCCCCCCTTTATTATTTATTATCCCTGCTT
CTCCTCATTGAGTCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_e02.g1 MSMg01no074_e02.g1 CHROMAT_FILE:
MSMg01no074_e02.g1 PHD_FILE: MSMg01no074_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:34 2005
         (175 letters)



>mm_chr1_170229847_170230421
          Length = 575

 Score =  339 bits (175), Expect = 8e-98
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggctggagctcccctgacatgcccaccccacttcttcctaagccagccatgctggcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggctggagctcccctgacatgcccaccccacttcttcctaagccagccatgctggcac 260

                                                                       
Query: 61  actctctctcacaccgccacagggatgcgaggccccctcaagagctgccaagctctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actctctctcacaccgccacagggatgcgaggccccctcaagagctgccaagctctctga 320

                                                                  
Query: 121 tatacgggctgctaatgcagcattattaagaacacgtttgtctctactcctctaa 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatacgggctgctaatgcagcattattaagaacacgtttgtctctactcctctaa 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)