BAC Information

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BAC

Clone NameMSMg01-074F01
Chromosome1 (Build37)
Map Location 176,296,415 - 176,297,024
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik
Downstream geneOlfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074F01.T7 (MSMg01no074_f01.b1)MSMg01-074F01.TJ (MSMg01no074_f01.g1)
ACCAG297400AG297401
length679677
length of high quality
(start - end)		611 (69 - 679)548 (73 - 620)
definitionCHROMAT_FILE: MSMg01no074_f01.b1 PHD_FILE: MSMg01no074_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:39 2005CHROMAT_FILE: MSMg01no074_f01.g1 PHD_FILE: MSMg01no074_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCG
GATTCTTCAGTAATCTCGCATCTATTTAATCTCAATTCCCCAACTTCCAT
AACATGATGCTTGTCTATATACATTGATAAATTCAGCTTCACATTAGGAA
GAGTTATTTTTCTGGTCTCACATTTCAATATATTTGATAACTAGCATTTA
TGGAGTAAATGTTTCCCCAAATTTTTCAAATGTTTATCCAGTTTTCACTT
CACTGCATAAATATGAGGAACATAAGACAGCTGTAATCCATGTAGGACAG
CTGAGATTAATGTACTTTTGAAGTAATTATATCTAGGAAGTAGCATATTT
GTGACTGGCATCACACTGTTTCCTTACCATTCTTTCTACTCCCCATTGTT
TTCCTCTTCAACAATGTGACCATGATCATTATGCCTCCACTCCTCAAGGT
GACTTTCAAGGTGACAATTTAAGAAATCCAGAACATAGTTGAACAAGTGT
CTGTCATCATAGCCCTCAGGAAAGTGATGCAGGAGGGTTGTGTGAGTTCA
CAGCCAGCCTAGGCTCAATTCCTAGTAAGTGAATGCAAGTGATAGGATGT
GTAGAAGAAAGCACTAATGTGTGAATCCTGTCTTTTTTTTTTAAACCATG
GCCTGAGAGTTTGCTTAGTGCTGCTCTTC

CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCTCATGA
GATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCT
GGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTG
GCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTC
TGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGA
TTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAG
TTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAA
GGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGC
CCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGG
CCAGTTGTCTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTCT
TGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGA
ATCTCTGCGACTCTCTCGCCCGACCCAGAAATGGCTGGCACTCTGTATTC
CACATGGTCACCCGTGCAGCCTGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_f01.b1 MSMg01no074_f01.b1 CHROMAT_FILE:
MSMg01no074_f01.b1 PHD_FILE: MSMg01no074_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:39 2005
         (611 letters)



>mm_chr1_176296397_176297406
          Length = 1010

 Score = 1174 bits (607), Expect = 0.0
 Identities = 610/611 (99%), Gaps = 1/611 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctatttaatctcaattccccaacttccataacatgatgcttgtctatatacattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 628 catctatttaatctcaattccccaacttccataacatgatgcttgtctatata-attgat 570

                                                                       
Query: 61  aaattcagcttcacattaggaagagttatttttctggtctcacatttcaatatatttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaattcagcttcacattaggaagagttatttttctggtctcacatttcaatatatttgat 510

                                                                       
Query: 121 aactagcatttatggagtaaatgtttccccaaatttttcaaatgtttatccagttttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aactagcatttatggagtaaatgtttccccaaatttttcaaatgtttatccagttttcac 450

                                                                       
Query: 181 ttcactgcataaatatgaggaacataagacagctgtaatccatgtaggacagctgagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttcactgcataaatatgaggaacataagacagctgtaatccatgtaggacagctgagatt 390

                                                                       
Query: 241 aatgtacttttgaagtaattatatctaggaagtagcatatttgtgactggcatcacactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aatgtacttttgaagtaattatatctaggaagtagcatatttgtgactggcatcacactg 330

                                                                       
Query: 301 tttccttaccattctttctactccccattgttttcctcttcaacaatgtgaccatgatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttccttaccattctttctactccccattgttttcctcttcaacaatgtgaccatgatca 270

                                                                       
Query: 361 ttatgcctccactcctcaaggtgactttcaaggtgacaatttaagaaatccagaacatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttatgcctccactcctcaaggtgactttcaaggtgacaatttaagaaatccagaacatag 210

                                                                       
Query: 421 ttgaacaagtgtctgtcatcatagccctcaggaaagtgatgcaggagggttgtgtgagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttgaacaagtgtctgtcatcatagccctcaggaaagtgatgcaggagggttgtgtgagtt 150

                                                                       
Query: 481 cacagccagcctaggctcaattcctagtaagtgaatgcaagtgataggatgtgtagaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cacagccagcctaggctcaattcctagtaagtgaatgcaagtgataggatgtgtagaaga 90

                                                                       
Query: 541 aagcactaatgtgtgaatcctgtcttttttttttaaaccatggcctgagagtttgcttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  aagcactaatgtgtgaatcctgtcttttttttttaaaccatggcctgagagtttgcttag 30

                      
Query: 601 tgctgctcttc 611
           |||||||||||
Sbjct: 29  tgctgctcttc 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space:   601000
Effective search space used:   601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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