BAC Information

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BAC

Clone NameMSMg01-074H07
Chromosome1 (Build37)
Map Location 81,941,642 - 81,941,921
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074H07.T7 (MSMg01no074_h07.b1)MSMg01-074H07.TJ (MSMg01no074_h07.g1)
ACCAG297508AG297509
length683657
length of high quality
(start - end)
312 (52 - 363)280 (55 - 334)
definitionCHROMAT_FILE: MSMg01no074_h07.b1 PHD_FILE: MSMg01no074_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:49 2005CHROMAT_FILE: MSMg01no074_h07.g1 PHD_FILE: MSMg01no074_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATTGAGCCTTTTTGCATCGATATTCATAAGGGAAATTG
GTCTGAAGTTCTCTAACTTTGTTGTGTCTTTCTGTGATTTAGGTATCAGA
GTAATTGTGGCTTCATAGAATGAATTGGGTAGATTACCTTCTGCTTCTAT
TTTGTGGAATAGTTTGTGAAGAACTGGAATTAGATCTTCTTGGAAGGTTT
GATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGG
AGACTATTAATGACTGCTTGTATTTCTTTAGAGGATATAGGACTGTTTAG
ATCATTAACCTGATCCTATTTTAACTTTGCCACCTGGCATCTGTCTAGAA
ATTTGTCCATTTCGTCCAGCCCCCCCAGATTTGTTGAGCATAGCCTTTTG
TAAAAGGATCTGATGGTGTTTTGGATTTCTTCATAAACTGCTGTTATGTC
TCCATTTTTATATCTGATTTTCGTAATTTATTTTGCTCTACCTTTTGCCC
CTTTATGTACACTTTTTATTCTCTTTTTTTCCTAGTGTTATTTCCTTTAA
CAAACTATCTCCTCTTTGGTTCGCCTTTCACCATTAGCTTCCCCTTGTAA
TTTCAACTTTTTATTTTTTATTCTTTTCTTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGCTTTAATGTAATGAGATGGAAGTTGCTAGGGAGGTTTCTGTCTT
CCCTGTGGAGATCTTTACTCAGAATTCCAAATGTTTTCAGCTGGCCTGTG
ATTCCCCAACTCTTTCAAGTAACAAGAAAAACAAAATATAAATGTGAATT
TTAAACTTATATGGAAACCGTTTTATTCACCAAAGCAAATTCTCAATTGG
TAATAAAATGGGGATGGGGTGGGGAACCCATTCAAAAAAAATGTCAGGAT
TCAAACATGCCCCATTTTTCTTCTTCTCCAAGATACCTTCTTATGCCCAG
CCCAATTCCACCACACAGTGGAAGCCATTTTAACTTTTGTGTTCCCCCCC
AGACCTTGTGAATCTTGAATACTTATGAATCCATTCTTTACCTATACCCC
GCTCCTGCCCCCAGGAATACACATAAATTTTCCTCCTATTTACACACTGA
ACTAACAACGCTACATGCCCTCTGAGTCGTCTTTTCCACTTACAATTACC
ACCCTATTCATCGTATTAAAATATCCTTATATTTTAATGTACTATTCATA
AAAAAATTGCCTAATCATTACTTTTCTTATTTTTTTACTCTTATTATTTT
ACCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_h07.g1 MSMg01no074_h07.g1 CHROMAT_FILE:
MSMg01no074_h07.g1 PHD_FILE: MSMg01no074_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:50 2005
         (280 letters)



>mm_chr1_81941442_81942121
          Length = 680

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttaatgtaatgagatggaagttgctagggaggtttctgtcttccctgtggagatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agctttaatgtaatgagatggaagttgctagggaggtttctgtcttccctgtggagatct 421

                                                                       
Query: 61  ttactcagaattccaaatgttttcagctggcctgtgattccccaactctttcaagtaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttactcagaattccaaatgttttcagctggcctgtgattccccaactctttcaagtaaca 361

                                                                       
Query: 121 agaaaaacaaaatataaatgtgaattttaaacttatatggaaaccgttttattcaccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agaaaaacaaaatataaatgtgaattttaaacttatatggaaaccgttttattcaccaaa 301

                                                                       
Query: 181 gcaaattctcaattggtaataaaatggggatggggtggggaacccattcaaaaaaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gcaaattctcaattggtaataaaatggggatggggtggggaacccattcaaaaaaaatgt 241

                                                   
Query: 241 caggattcaaacatgccccatttttcttcttctccaagat 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 caggattcaaacatgccccatttttcttcttctccaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)