Query= MSMg01no074_h13.b1 MSMg01no074_h13.b1 CHROMAT_FILE:
MSMg01no074_h13.b1 PHD_FILE: MSMg01no074_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:51 2005
(268 letters)
>mm_chr1_137985247_137985915
Length = 669
Score = 427 bits (221), Expect = e-124
Identities = 257/269 (95%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 1 actggcccttc-acatcactgtgctccagtgcaggctcgggagccttacctggcaagtca 59
|||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 469 actgacccttcaacatcactgtgctccagcgcaggctcgggagccttacctgggaagtca 410
Query: 60 gccgaagggtaggggtctttcacctcattgacgttcgattcaaactcatcgattttcagc 119
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 409 gccgaagggtaggggtctttcacctcattaacgtttgattcaaactcatcgattttcagc 350
Query: 120 tgtagaaagaacagtgatggtggtgaggaagcaaaaaccgatgctcgaacttactgggca 179
||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 349 tgtagaaggaacagtgatggtggtgaggaagcaaaaactgatgctcaaacttactgggca 290
Query: 180 tgctccgtggagccattatgcagctttctgaatgttccctatgacccaagaggcggctag 239
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 289 tgctccgtggagccattatgcagcttcctgaatgttccctacgacccaagaggcgggtag 230
Query: 240 aggtggagttgttatgtcttacagataag 268
|||||||||||||||||||||||||||||
Sbjct: 229 aggtggagttgttatgtcttacagataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 669
Length adjustment: 9
Effective length of query: 259
Effective length of database: 660
Effective search space: 170940
Effective search space used: 170940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no074_h13.g1 MSMg01no074_h13.g1 CHROMAT_FILE:
MSMg01no074_h13.g1 PHD_FILE: MSMg01no074_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:51 2005
(289 letters)
>mm_chr1_137849955_137850642
Length = 688
Score = 458 bits (237), Expect = e-133
Identities = 265/283 (93%), Gaps = 15/283 (5%)
Strand = Plus / Plus
Query: 19 tttgacagtctgtccttttaatgaagtacagatagcccgcaagccccattcttgatgccc 78
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 tttgacagtctgtccttttaatgaagtacagatagcccgcaagccccatccttgatgccc 264
Query: 79 tcacccaggtcctctgccctctctgaatttccattcctctggtcacagtgggctcagctt 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacccaggtcctctgccctctctgaatttccattcctctggtcacagtgggctcagctt 324
Query: 139 ccaccccatgcaccaccctctctgg--------------gtgcagaacacagacaccctt 184
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 ccaccccatgcaccaccctctctggagcttcgttcagaggtgcagaacacagacaccctt 384
Query: 185 agtaacagggtcactctgagccatcattcagcttaagactacatcctccactcttcttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtaacagggtcactctgagccatcattcagcttaagactacatcctccactcttcttct 444
Query: 245 attttcttcttcaaggacttcaacccttctggatgcatctcac 287
| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 agtt-cttcttcaaggacttcagcccttctggatgcatctcac 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
