TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGGTTCAGCTCACAATGAGACTACTAGTAAGCACCACTAGAAAG
GCTTAAAATTGTTTCTCAGACCAAAACAGTTAATTTATGACAGAATATGA
AGACTAGAAGTCAGTTTTGACACCGAGTTTTGCTTATTTCAGTTCACTAG
GCTACTTACTATCTGAATGCCAGACATTTTTGGCTTCATGTCAAGAATTT
ATAATAGCTTTTACTAGAGTTTTGCAAGTTATATTCCTTAAACTGTACCC
GGTTCTATGGCCTAATTAACCTTTAGCAATACTGCAGTTCTCAGGTTATA
GAGGAAATCTTCATGTATCAGGGATCAAGTAGGATGGGCTTTTAAAGGTC
AGAGCATTATCATGAGTGCGGAGATTGTGACTTGATGACTAGGAAGTGAA
GGAGCCAAGAGCAATCTCAAAGAAGCCAGATTCAAACTCATGTTTATTCA
TACGTCTTAACATTGACTTTGGTAAATATGTGTCTGCAGGATTTTCACAT
TACCGACTATTAGTTGGGGGGAGTATTTCAAAAACTACTAACATTTAAAT
ATTATCTACCAATATGTAGAAAGTTCCAGTTCAGTACCTTGTCCCCTATG
GTGATTATCTATGCCATATTCCGTATTACCTCATGAATATTTCCTGAACG

TTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGCACCCCATTTT
TAATAGGGTTATTTGGTTTTCTGCAGTCCAACTTCTTCGGTTCTTTATAT
ATATTGAATATTAGCCCCCCCTATCACATTTAGGATTGGTAAAGGTGTTT
TGCCAATCTGTTGGTTGCCTTTTGGTCATACTGACAGTGCCTTTTGCCTT
ACAGAAACTTTGAAATTTTATGAGGTCCCATTTTTTGATTCTTGATCTTA
CAGGCCTTGCCATTGGTGTTTGGTTCAGGAATTTTTCCCCTGTGCCCATA
TCTTCAAGGCTCTTCCCCACTTATACTCTATAAGTTTCAGTCTCTCTGAT
TTTGTTAATTGGGATACTGTCCCTGTGCCCTCTAGTTAGTCTGGCTAGGG
AAATTATCTATCCTATCGATTTTCTCAAAGACCCAGTTCCTGCTTTGGTT
GATTCTTTGAATAGTTCTTTTCGATTCCATTCGCTTTATTTCCGCTCTGA
GCTTGATTATTTCCCGCAATGCTCTCCTATTTGCTGATCTCGCTGCCTAT
TGTACTCCAGCTTTCCCCTGTACCGTCTATACGCTTTCGCCGTCCCTCTT
TACCCTTCTACCCGTAGCCCCTCACCCTCTACACCCCCTTTTATTTTTG

Query= MSMg01no074_k03.b1 MSMg01no074_k03.b1 CHROMAT_FILE:
MSMg01no074_k03.b1 PHD_FILE: MSMg01no074_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:03 2005
         (502 letters)



>mm_chr1_80809292_80810193
          Length = 902

 Score =  955 bits (494), Expect = 0.0
 Identities = 497/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatggttcagctcacaatgagactactagtaagcaccactagaaaggcttaaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatggttcagttcacaatgagactactagtaagcaccactagaaaggcttaaaa 264

                                                                       
Query: 65  ttgtttctcagaccaaaacagttaatttatgacagaatatgaagactagaagtcagtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtttctcagaccaaaacagttaatttatgacagaatatgaagactagaagtcagtttt 324

                                                                       
Query: 125 gacaccgagttttgcttatttcagttcactaggctacttactatctgaatgccagacatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacaccgagttttgcttatttcagttcactaggctacttactatctgaatgccagacatt 384

                                                                       
Query: 185 tttggcttcatgtcaagaatttataatagcttttactagagttttgcaagttatattcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggcttcatgtcaagaatttataatagcttttactagagttttgcaagttatattcct 444

                                                                       
Query: 245 taaactgtacccggttctatggcctaattaacctttagcaatactgcagttctcaggtta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaactgtacccggttctatggcctaattaacctttagcaatactgcagttctcaggtta 504

                                                                       
Query: 305 tagaggaaatcttcatgtatcagggatcaagtaggatgggcttttaaaggtcagagcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagaggaaatcttcatgtatcagggatcaagtaggatgggcttttaaaggtcagagcatt 564

                                                                       
Query: 365 atcatgagtgcggagattgtgacttgatgactaggaagtgaaggagccaagagcaatctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcatgagtgcggagattgtgacttgatgactaggaagtgaaggagccaagagcaatctc 624

                                                                       
Query: 425 aaagaagccagattcaaactcatgtttattcatacgtcttaacattgactttggtaaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagaagccagattcaaactcatgtttattcatacgtcttaacattgactttggtaaata 684

                             
Query: 485 tgtgtctgcaggattttc 502
           ||||||||||||||||||
Sbjct: 685 tgtgtctgcaggattttc 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)