BAC Information

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BAC

Clone NameMSMg01-074O22
Chromosome1 (Build37)
Map Location 84,251,239 - 84,251,524
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream gene4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074O22.T7 (MSMg01no074_o22.b1)MSMg01-074O22.TJ (MSMg01no074_o22.g1)
ACCAG297869AG297870
length709701
length of high quality
(start - end)
277 (42 - 318)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no074_o22.b1 PHD_FILE: MSMg01no074_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:28 2005CHROMAT_FILE: MSMg01no074_o22.g1 PHD_FILE: MSMg01no074_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACAATTTGCGGCGCTATACGACTACTATATCCAGAAATCCGCGGAATT
CTCTCTCTCTCCATTTCTCTCTCTCTCTCCCTCTCTCTGAGAAAGGTCTT
GAGCTTGTTATGGAGCCAAGGGTGACTCTAAACTTCTGATTCTCTTGACT
CAAACTTTGGTGTGTTGGGATTGTATGTGTGTACCACATACATGTATGTG
TGGCTGGTTTCTGTGGTTTGAGGGATCAAACACTGGGTGAGCTACATCCT
AAGACTCTAGGAATGGAAGCTTCAGGAAGAGACCATGCACATCCAAGTGC
AGAAGCAAGTTTCCCTTCTTGTGCCCTGGACACAGAGAGGAGAGATTGCT
TCCTGCTTGTATGAACCCCCCGCCCACCCCTCAAACACTTGTGAAAAATC
CCAGACAAGATGCTCACCCCTGTTTGACTATGACAAATATTCAATACAGA
TCCATGAAATTATGGGCTGCTGTTCTAAAATGGTCTGCTCAAGCAGGGCG
ATCTTGCGCGTATCCACGACGCCCATTTTATATTCTTCTGCCCCCTTTCT
TGACCCTCATTTTTTAACGCCGTTGTCTACAAAGGACATCATTGGCCTCC
CACTTTTCCCCACCCCCCCCGCACGATTTTTTGTTTGTTCCTTGCCCCTC
TCCTCCCCTCACCCCTTTTCCCCCATATTTTCCCCCCCCCCCCCCCTTTA
CTTCTTTCA
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACATTGTCCTCAGATGAACTTACAGA
GCCACTCGCATTGTTAACCAACAACCACAAATGTTCCTCAAGAAATAGAA
CCCACACAGCCTGAGACCATGTCTTTTTAACATTTTTTGGTCCAAGCAGC
TGTTTGCATGCTTAATACTTGTCCGATTCCAGCTCAGAAATGAGACAGCG
TCTCTGGGTGATGCACACACCAAAAGCGCTTGATTTGTTTTGGATGCAGT
AAAAGCATCCTTACTTAACAGTGGTGACACTCTGCTTTTTCAGCACAGAG
ATTTGGCAAGAATGTGTCACCCCCCGCCAAGTTATAAAAACCTTAAAGAT
TTACAGCAGATGCCAAGAACAGGCCCACACCCTGATAAACATGGATGGAA
ATCTTTTTGCAGGGATGGACAAGATCAGGGAAACCATGGGCCAGAAATAT
GTCCGATGTGGGATTATGTTTCTTCAGTAACTTAATAAAGTCAGCCCATG
TAGATAGAAAGACTGTGTCGTCCCTTTGCTCTTCCCAGCAGCCACACTCA
GCTCTTATATACAGCTTTTCTAGGAAAGGAACTGAAAACTAACATTGATG
TTCAAGGGAAAGATCTACCTGTGTGCCCATCACGACTCTGCTGTCGAGAG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_o22.g1 MSMg01no074_o22.g1 CHROMAT_FILE:
MSMg01no074_o22.g1 PHD_FILE: MSMg01no074_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:28 2005
         (291 letters)



>mm_chr1_84251038_84251726
          Length = 689

 Score =  507 bits (262), Expect = e-148
 Identities = 281/288 (97%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   acattgtcctcagatgaacttacagagccactcgcattgttaaccaacaaccacaaatgt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acattgtcctcagatgaacttacagagccactcgcattgttaaccaacaaccacaaatgt 261

                                                                       
Query: 62  tcctcaagaaatagaacccacacagcctgagaccatgtctttttaacattttttggtcca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcctcaagaaatagaacccacacagcctgagaccatgtctttttaacattttttggtcca 321

                                                                       
Query: 122 agcagctgtttgcatgcttaatacttgtccgattccagctcagaaatgagacagcgtctc 181
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 322 agcagctgtttgcatgcttaatacttgtcccattccagctcagaaatgagacagtgtctc 381

                                                                       
Query: 182 tgggtgatgcacacaccaaaagcgcttgatttgttttggatgcagtaaaagcatccttac 241
           ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgggtgatgcacac--caaaaacgcttgatttgttttggatgcagtaaaagcatccttac 439

                                                           
Query: 242 ttaacagtggtgacactctgctttttcagcacagagatttggcaagaa 289
           |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 440 ttaacagtggggacactctgctttttcagcgcagagatttggcaagaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space:   191760
Effective search space used:   191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)