Query= MSMg01no074_p09.b1 MSMg01no074_p09.b1 CHROMAT_FILE:
MSMg01no074_p09.b1 PHD_FILE: MSMg01no074_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:30 2005
(318 letters)
>mm_chr1_95634228_95634945
Length = 718
Score = 491 bits (254), Expect = e-143
Identities = 289/310 (93%), Gaps = 16/310 (5%)
Strand = Plus / Minus
Query: 5 gaattcagtcctgtcagtggggattttgtctgataaacacatcgaatccgtgtatctgaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcagtcctgtcagtggggattttgtctgataaacacatcgaatccgtgtatctgaa 465
Query: 65 ggaggataacacacacaccaaatgatagactcaggcaaaggctggaccaggcaaagcaaa 124
||||||||||| | |||||||||||||||||||||| | |||||||
Sbjct: 464 ggaggataacaaatacaccaaatgatagactcaggc--------------g--aagcaaa 421
Query: 125 tacctgaaagtagtgtgagcactaacagtcatcagaaccgggctagaggtggggctcagt 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tacctgaaaatagtgtgagcactaacagtcatcagaaccgggctagaggtggggctcagt 361
Query: 185 gaaggctttgcccagagttcataaagcactgaataaatgagtcaggtcctggtgccagga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaaggctttgcccagagttcataaagcactgaataaatgagtcaggtcctggtgccagga 301
Query: 245 ggatcagaaattcaaggtcatctatgcattgtgttcaaggtcagcctgggctacaagaga 304
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggatcagaagttcaaggtcttctatgcattgtgttcaaggtcagcctgggctacaagaga 241
Query: 305 ccctatttcc 314
||||||||||
Sbjct: 240 ccctatttcc 231
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_p09.g1 MSMg01no074_p09.g1 CHROMAT_FILE:
MSMg01no074_p09.g1 PHD_FILE: MSMg01no074_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:30 2005
(522 letters)
>mm_chr1_95533399_95534319
Length = 921
Score = 913 bits (472), Expect = 0.0
Identities = 518/552 (93%), Gaps = 31/552 (5%)
Strand = Plus / Plus
Query: 1 ttaatgattgaggaatctctgtaggcctttatttttgatttttaagacaggacctcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttaatgattgaggaatctctgtaggcctttatttttgatttttaagacaggacctcattc 230
Query: 61 tgtagcctaggctggcttaaaactctctatgtggccctttttggcctcaaattcacagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tgtagcctaggctggcttaaaactctctatgtggccctttttggcctcaaattcacagca 290
Query: 121 gttctgcctctg---------------------------ct---tctgcctctgcctctg 150
|||||||||||| || ||||||||||||||||
Sbjct: 291 gttctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctg 350
Query: 151 cctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctg 410
Query: 211 cctctgcctctgcctctgcctcccaaattgctggggttatccatatgaaccatcagactt 270
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 411 cctctgcctctgcctctgcctcccaaa-tgctggggttatccatatgaaccatcagactt 469
Query: 271 catgtgaaaagccctactcatgagattaaacttcgtattggtttattgctttgttcttgg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 catgtgaaaagccctactcatgagattaaacttcgtattggtttattgctttgttcttgg 529
Query: 331 gtcaaacacacattgaagagttgttggctgtttaggaagacttccatgtagtttatctat 390
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gtcaaatagatattgaagagttgttggctgtttaggaagacttccatgtagtttatctat 589
Query: 391 aaaacacttcccaagggtctggagagattttcttttcagctgttaagagcactggagact 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaaacacttcccaagggtctggagagattttcttttcagctgttaagagcactggagact 649
Query: 451 tttgcataggaaccaggcttggttcccagcacccacatggtggctctcaactattggtca 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tttgcataggaaccaggcttggttcccagcacccacatggtggctctcaactattggtca 709
Query: 511 ctccaatttcag 522
||||||||||||
Sbjct: 710 ctccaatttcag 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 127
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 921
Length adjustment: 10
Effective length of query: 512
Effective length of database: 911
Effective search space: 466432
Effective search space used: 466432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
