BAC Information

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BAC

Clone NameMSMg01-074P15
Chromosome1 (Build37)
Map Location 150,505,993 - 150,506,311
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074P15.T7 (MSMg01no074_p15.b1)MSMg01-074P15.TJ (MSMg01no074_p15.g1)
ACCAG297903AG297904
length696691
length of high quality
(start - end)
322 (46 - 367)615 (73 - 687)
definitionCHROMAT_FILE: MSMg01no074_p15.b1 PHD_FILE: MSMg01no074_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:31 2005CHROMAT_FILE: MSMg01no074_p15.g1 PHD_FILE: MSMg01no074_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCACAAGGACCTCAGTGGGAGAGGATGTGCCTAGTCCTGCTGGG
ACTAGATGTCACAGAGTTGGGCAGTATCCAAGAAAGGCTTCCCATTCTCT
TAGAACAGATTTGTAAGAGTGGGACTGGTAGGAGAGGTGTCTTGATGTCT
TCGCTTTGATTATAGTCAGGCAGAAGGTGAATAAAAGTAAAATTATTGGA
GAATAAAAATGGTCAAATTCTAGTTAAACTTAAAGAGATCACGACAAGAA
TATAAGATGGAGGAACCTTTGCACTGCCTTGGCCTATCTGAACAATTTTC
CATTTACCCCTTTGGAAGAATGTTAAAATCATCTATCCATTTATTTGACT
TTTATGTTCAGTATTTGACAATAGGTAGTTGAGAATTGGATAAATATTTT
AAAAACTAAATTCCCTCTGTTCTTTCTATCTCTGTCCATATATGTAAGAA
CATTATTTCTCCACAATTTTCTATATATTAATGGCAGTACATATGTCGCT
GATTGCATAAGCTAGCAAACATGCTCCTAAAAACAACTACGACTACAATG
CCATAGAATATAGATTTAAATAATTTCTCATATTTTAATCTCTTACTTCT
CATATTTCATTCCTCATCTCTGACCCACTATTTCTTTCTGTGACAA
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTCTACCCCATTTTTTT
AATAGCATTATTTGATTTTCTAGAGTCCATCTTCTTGAGTTCTTAATATA
TATTGGATATTAGTTGCCTATCTGATTTAGGATTGGTAAAGATCCTTTCC
CAATCTGTTGGTGACCTTTTTGACTTATTGACAGTACATTTGCCTTACTG
AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAAC
AGAAGCCATTGCTGTTCTGGTCAGGAATTTTCCCCCTGTGCCCTTATCTT
CGAGGCTATAGGGGAGGACTTTCTAAATAAATCTCCAGTTTCTTGGCAAA
TAATATCAACACCCACTAAACAGGACCTCGTGAATCAAAAATACTTCTGT
ACAGCAAACAGTTAAGAGTGTATAGACAGCCTACAGAACTGAAGAAAAAG
CTAGCCAGCTATGAATTTGACAGAGGAATAATAACTAGAACTTACAAAAG
AACTTAAAAAAAATCAAACTACCTAATCAATAAGCAAAGGAATAAAATTA
ACACACAGGGAAATGTAAATTCGAACTACAGTGATGTTTCAATACAACCA
AACTAGAATTAAGAAATAAATCACAATATGTGTTGGTGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_p15.b1 MSMg01no074_p15.b1 CHROMAT_FILE:
MSMg01no074_p15.b1 PHD_FILE: MSMg01no074_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:31 2005
         (322 letters)



>mm_chr1_150505651_150506372
          Length = 722

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccccacaaggacctcagtgggagaggatgtgcctagtcctgctgggactagatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggaattccccacaaggacctcagtgggagaggatgtgcctagtcctgctgggactagatg 602

                                                                       
Query: 64  tcacagagttgggcagtatccaagaaaggcttcccattctcttagaacagatttgtaaga 123
           |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 601 tcacagggttgggtagtatccaagaaaggcttcccattctctgagaacagatttgtaaga 542

                                                                       
Query: 124 gtgggactggtaggagaggtgtcttgatgtcttcgctttgattatagtcaggcagaaggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtgggactggtaggagaggtgtcttgatgtcttcgctttgattatagtcaggcagaaggt 482

                                                                       
Query: 184 gaataaaagtaaaattattggagaataaaaatggtcaaattctagttaaacttaaagaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaataaaagtaaaattattggagaataaaaatggtcaaattctagttaaacttaaagaga 422

                                                                       
Query: 244 tcacgacaagaatataagatggaggaacctttgcactgccttggcctatctgaacaattt 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaccacaagaatataagatggaggaacctttgcactgccttggcctatctgaacaattt 362

                              
Query: 304 tccatttacccctttggaa 322
           |||||||||||||||||||
Sbjct: 361 tccatttacccctttggaa 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)