BAC Information

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BAC

Clone NameMSMg01-075H22
Chromosome1 (Build37)
Map Location 103,312,575 - 103,313,041
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC100041909, LOC100040993, LOC383650
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075H22.T7 (MSMg01no075_h22.b1)MSMg01-075H22.TJ (MSMg01no075_h22.g1)
ACCAG298296AG298297
length681658
length of high quality
(start - end)
469 (56 - 524)498 (73 - 570)
definitionCHROMAT_FILE: MSMg01no075_h22.b1 PHD_FILE: MSMg01no075_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:10 2005CHROMAT_FILE: MSMg01no075_h22.g1 PHD_FILE: MSMg01no075_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGCATTTTTCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCAACTTCTCCTCCAGCACTGTGTCTTCATATTTG
TCACAATAGAACACCAAGAAAATGTGTAAAACTCAGCATGCCCCTAAACT
TATACACATGCTGATGTACCACATGCACACACACACACACACACACACAC
ACACACACACATGGCACAACAGAAAATAGAGAGCTATTGAATACACTTTT
ACAGAAAAAAAAACTCAAGGTCAAGCATTTTTGATAATTCTTTACTTTTG
TCAGAAAAACTGCCTCTATTATAATACCAGTCTAATGAAGCCTCATAAGT
GGATCTCTAGCGTGAATACTAAACAGTTCCTCAACGTGTGAACATGAAAA
GGAGTCCAGCTCATTTGAGGGATCAATTCACATTGGTTTTATTTCTCTTT
GGATTGCCCATTCCTTTCTGACCATTTTCATCAACTACCCACCTACCCAA
AATGCTTCTGATGATTGAAAAACTATTAGTTGAACAAGCCATCAGTATAG
AAAAGACAAACTAGCTATAAAAGATACCATTTTCATGAAATTAACCTGCT
ACATTTTCTAATTATTCGTCTTTAATGCAACATAACTACCTCCCGCTGTT
TCACACACCCATATGTACTTACATTAAGTAT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGCTTGTAAAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGAATCCTGT
AATACCTCTGCTGGGCATATATCCAGAAGATGTTCCAACTGTTCGAAGGA
CCCATGCTACACTATGTTCATAGCATCCTTATTTTTCAAAGCCAGAAGCT
GGAAAGAACCTAGATGCCACTCAACAGAGGAATGGATACAGAAAATAATG
CAAATTTACACAATGGATTGCTACTCAGCTATTAAAAAGAATGAATTTAG
GAAATTCCTATGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACCCAATCACAAAAGAACTCACATGATATGTACTCAATGATTAGTGGA
TATTAGCCCAGAAACTTAGAATACCCAAGATGTAGGATATATTTTGTGAT
GTACATGTGTCTCAGGGGAACAACGACCAGGGTGTGGATGCTTTGGTCCT
TCTTAGAATTGAGAGCACAATGCCTATGGAGGGAGTTTCAGAGGTGAAGT
TTGGAGCTGAAACTAAGGGGTGGACTGTCTAGAGACTGCTATATCCAAGG
ATCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_h22.b1 MSMg01no075_h22.b1 CHROMAT_FILE:
MSMg01no075_h22.b1 PHD_FILE: MSMg01no075_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:10 2005
         (469 letters)



>mm_chr1_103312215_103313088
          Length = 874

 Score =  737 bits (381), Expect = 0.0
 Identities = 446/471 (94%), Gaps = 10/471 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaacttctcctccagcactgtgtcttcatatttgtcacaatagaacaccaaga 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 827 gaattctcaacttctcctccagcactctgtcttcatatttgtcacaatagaacaccaaga 768

                                                                       
Query: 65  aaatgtgtaaaactcagcatgcccctaaacttatacacatgctgatgtaccacatgcaca 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||
Sbjct: 767 aaatgtgtaaaactcagcatgcccctaaacttatacacatg-tgatgtaccacacacaca 709

                                                                       
Query: 125 cacacacacacacacacacacacacacacacatggcacaacagaaaatagagagctattg 184
           |||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||||
Sbjct: 708 cacacacacacacacacacacacacacacacacg--acaacagaaaatagggagctattg 651

                                                                       
Query: 185 aatacacttttacagaaaaaaaaactcaaggtcaagcatttttgataattctttactttt 244
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 650 aatacacttttacag-aaaaaaaactcaaggtcaagcttttttgataattctttactttt 592

                                                                       
Query: 245 gtcagaaaaactgcctctattataataccagtctaatgaagcctcataagtggatctcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gtcagaaaaactgcctctattataataccagtctaatgaagcctcataagtggatctcta 532

                                                                       
Query: 305 gcgtgaatactaaacagttcctcaacgtgtgaacatgaaaaggagt---ccagctcattt 361
           || |||||||||||||||||||||| |||||||| |||||||||||   ||||||||| |
Sbjct: 531 gcatgaatactaaacagttcctcaatgtgtgaacctgaaaaggagtagtccagctcatgt 472

                                                                       
Query: 362 gagggatcaattcacattggttttatttctctttggattgcccattcctttc---tgacc 418
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||   ||| |
Sbjct: 471 gagggatcaattcatattggctttatttctctttggattgcccattcctttcctctgatc 412

                                                              
Query: 419 attttcatcaactacccacctacccaaaatgcttctgatgattgaaaaact 469
           |||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 411 attttcatcaactacccaactacccaaaatgcttttgatgattgaaaaact 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 874
Length adjustment: 10
Effective length of query: 459
Effective length of database: 864
Effective search space:   396576
Effective search space used:   396576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)