ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGAATCCGCG
GAATTCCTACCTCTCCCTCATTTTTCTTCTTTACATTCCTCATTCTTGCT
CACAAACTGACTTCCAGTGTTTAGACCTGATCTTTTTCATTCCCAAGTAC
TGAGGTCACAAAGATTAACATTTCTGGGATTCTGCAAACCTATCTGGAAT
TAAGTTGTCACTGGATGTCAGTGGCAGTTTGTGATGTCCTTTCCAGATGA
CACTTCTTATTGAGATGCTTTTGCTAATGTTTATAATCTAGGAACATCAG
TTGGGGATGCCAAGTGTGGGTCTAAGCTCCAAAGGGCCCAAACTCTAGTC
ATGGGTAAGAAGAGGTCTTGTTCTATAAATCCTAAATATCAAAAATGCTT
CTGAAGAACATGGTCCCTTTGTGACATTCTTTCTTTTAAATGCAACTCAT
CAACTGTGCAATAGTACTAGAGCTATGAGTTCAGTCCATCACAGTAGAGA
ATCTAAAAACTGTGCTCCATTTTCTCCAATATTCTCATTGGTTCAAATGA
GGTGGAAGTGGATACAGACAGACTCCAAATAGGATAAAGTTGACAGTGTT
TCCCAGGCCAAAGAAGATGCCAGTGTGGATGACTATTCTGAAAGGCTGAG
TCTGAAGTTAGCAAGAGAAAGGGGAGGCCATTCCTCATGTGGAAAATGTG
CTGACCACN

ACAAATGNTTAGGCCTGGGAGGGGCGCCTGCCTTTTCAAAATATTANNNT
GANNACTATAGAAGGATCCCGCCGGAATTCAGAGGGAGAGTGAGTTGGGA
CGTGAGGAGGAGTCCACTCTTCAAAATTCCATTGATGNNNANAACTATNA
ANNAACCCTTTGGTTAAAAATTGAACCGGATTAAAAAANNTCCNCCCCTT
AAAATAATTCCAAAATCCTTTNAAAATATTAACCCTTTCAAATAATTTGG
AAAAAAAGGGATCGTTGGGGGAGGGGGAGGGGGGGGGGGGCGGGGTAAAA
NNNTCAAAANCCCTAACCCAAAATAAAACAAAAAAAGATTTTTGTTATAG
GGTTTGTTGCGGGGGGGGGGGGGGGGGGGGGGGGGGTGTGGGGGTTGGGG
TGGGGATGGGGGGGCGANATTTANNTAAACCCCATTTTTTTTNATCANNN
NNNNNNNNNNNNTNTTTTCTTTTTTTTTTTTTCCCCCACCCCCANACCCC
CCNCCCCCACCCCAAATATAAAATTCATCTAAATTTTATTTTTTTGNCGT
CTGNCNCNCNCNCNCNCNNNNATANNNCNCCCCCNCCCNCACCCCCCACA
CCCTACACAACCCCTTCACCCCNAACCCCNCCCCCTTCACCCTTTTCCCN
CTCTTCTCTTCTTCTACCTCCTTCTCCTCTATCCCCCCCCCCCCCCCCAT
CTTCACACACCCTCATCCCAACACCCCCCCNCNATCTTATTATTTATTTT
TACAACTACTATTCCATCCTTATTCCCTACCTCTATCATCTAACCCCCCC
ACCAATCTCTCTCCCTATTTCTCCCCCTCTTTTACCTCCCCTATCTATTT
ATTACCTCCCCCCCCCCTCCAACCCACCAACCACTTACTATCATCCTCCC
CATTATTTAACATTTTATTTGTTTTTTTTG

Query= MSMg01no075_m13.b1 MSMg01no075_m13.b1 CHROMAT_FILE:
MSMg01no075_m13.b1 PHD_FILE: MSMg01no075_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:32 2005
         (512 letters)



>mm_chr1_160129959_160130870
          Length = 912

 Score =  899 bits (465), Expect = 0.0
 Identities = 498/509 (97%), Gaps = 2/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcctacctctccctcatttttcttctttacattcctcattcttgctcacaaactg 64
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 ggaattcctacctctccttcatttttcttctgtacattcctcattcttgctcacaaactg 264

                                                                       
Query: 65  acttccagtgtttagacctgatctttttcattcccaagtactgaggtcacaaagattaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttccagtgtttagacctgatctttttcattcccaagtactgaggtcacaaagattaac 324

                                                                       
Query: 125 atttctgggattctgcaaacctatctggaattaagttgtcactggatgtcagtggcagtt 184
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgtgggtttctgcaaacctatctggaattaagttgtcactggatgtcagtggcagtt 384

                                                                       
Query: 185 tgtgatgtcctttccagatgacacttcttattgagatgcttttgctaatgtttataatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 tgtgatgtcctttccagatgacacttcttattgagatgcttttgctaatgtttatgatct 444

                                                                       
Query: 245 aggaacatcagttggggatgccaagtgtgggtctaagctccaaagggcccaaactctagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 aggaacatcagttggggatgccaagtgtgggtctaagctccaaagggcccaaactctagc 504

                                                                       
Query: 305 catgggtaagaagaggtcttgttctataaatcctaaatatcaaaaatgcttctgaagaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgggtaagaagaggtcttgttctataaatcctaaatatcaaaaatgcttctgaagaac 564

                                                                       
Query: 365 atggtccctttgtgacattcttt-cttttaaatgcaactcatcaactgtgcaatagtact 423
           ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggtccctatgtgacat-cttttcttttaaatgcaactcatcaactgtgcaatagtact 623

                                                                       
Query: 424 agagctatgagttcagtccatcacagtagagaatctaaaaactgtgctccattttctcca 483
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agagctatgagttcagtccattacagtagagaatctaaaaactgtgctccattttctcca 683

                                        
Query: 484 atattctcattggttcaaatgaggtggaa 512
           ||||||||| |||||||||||||||||||
Sbjct: 684 atattctcactggttcaaatgaggtggaa 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)