Query= MSMg01no075_o23.b1 MSMg01no075_o23.b1 CHROMAT_FILE:
MSMg01no075_o23.b1 PHD_FILE: MSMg01no075_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:44 2005
(585 letters)
>mm_chr1_99585604_99586588
Length = 985
Score = 1118 bits (578), Expect = 0.0
Identities = 584/586 (99%), Gaps = 1/586 (0%)
Strand = Plus / Plus
Query: 1 agtcacgtaaacttttactagataacagtggcatacagaaaggtaagctcaactacagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agtcacgtaaacttttactagataacagtggcatacagaaaggtaagctcaactacagag 259
Query: 61 aaccaaacacacgtggacagaggagttgttcatattttcctttgtcttgaagtcttaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaccaaacacacgtggacagaggagttgttcatattttcctttgtcttgaagtcttaata 319
Query: 121 atgctatggttggttcccctatgtagtttcacagaaaataagctttaaaaaaa-ttaaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 atgctatggttggttcccctatgtagtttcacagaaaataagctttaaaaaaaattaaat 379
Query: 180 atttcattactgtgtctgtttcccttgggtttccataacgaaataggagagtcgcttgtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttcattactgtgtctgtttcccttgggtttccataacgaaataggagagtcgcttgtt 439
Query: 240 taaacaacagcaattcattttctcgtgcttctgggaatagaaattccaagctcaaggtta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taaacaacagcaattcattttctcgtgcttctgggaatagaaattccaagctcaaggtta 499
Query: 300 cttctgaggtttctgtcctaacttcaaaacgggttcagtctagctatgttcacgtggggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttctgaggtttctgtcctaacttcaaaacgggttcagtctagctatgttcacgtggggt 559
Query: 360 tgttccttaatttgcgtgtgattcctagtttaatctcttccacagaaactcgtcatgcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgttccttaatttgcgtgtgattcctagtttaatctcttccacagaaactcgtcatgcaa 619
Query: 420 tgagggctcttctgtatacctgcattgcacataggttatcttctctctagatacagttat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgagggctcttctgtatacctgcattgcacataggttatcttctctctagatacagttat 679
Query: 480 attccaagatacggggagagggtcatgatgtcagcttgtatataggagagatggagatga 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attccaagatacggggagacggtcatgatgtcagcttgtatataggagagatggagatga 739
Query: 540 cttataacaactccatatccttaacctgaagtcacttgatagtggg 585
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttataacaactccatatccttaacctgaagtcacttgatagtggg 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_o23.g1 MSMg01no075_o23.g1 CHROMAT_FILE:
MSMg01no075_o23.g1 PHD_FILE: MSMg01no075_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:44 2005
(599 letters)
>mm_chr1_99748662_99749659
Length = 998
Score = 1120 bits (579), Expect = 0.0
Identities = 594/599 (99%), Gaps = 1/599 (0%)
Strand = Plus / Minus
Query: 1 tcatgactcatgttctgcattgtgaatgcaccagttctcttgtaatgtttctttgatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tcatgactcatgttctgcattgtgaatgcaccagttctcttgtaatgtttctttgatcat 739
Query: 61 ttctccccttacatctatctctacaatttcaagaatgacagtgagatgcttgccttacgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttctccccttacatctatctctacaatttcaagaatgacagtgagatgcttgccttacgt 679
Query: 121 tgccatatcattctaagtgtgatttttatgcagaccacatatgtcagttcaacagacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgccatatcattctaagtgtgatttttatgcagaccacatatgtcagttcaacagacaat 619
Query: 181 gacaataaaaagcggatgataaaccttgtgcatgttgcatcttatcctttacatctgaaa 240
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gacaataaaaagcggaggagaaaccttgtgcatgttgcatcttatcctttacatctgaaa 559
Query: 241 acagaattggccatttaatcgcttggtgatactgcctccaatgtgtttctgagtatactc 300
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 acagaattggccacttaatcgcttggcgatactgcctccaatgtgtttctgagtatactc 499
Query: 301 aatggttggatttttttaagggtgtccccaaaatgcagtacatgttttgattctactaag 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatggttggatttttt-aagggtgtccccaaaatgcagtacatgttttgattctactaag 440
Query: 361 agatgaatatccactgagtagttccttaatcgcaaatctacacttgaaagtaaaatttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agatgaatatccactgagtagttccttaatcgcaaatctacacttgaaagtaaaatttta 380
Query: 421 aatgtattttctacaaatcttaatgcctattttcctttcacatgtacaagcatagaagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatgtattttctacaaatcttaatgcctattttcctttcacatgtacaagcatagaagct 320
Query: 481 catctgggaaatggaggctctactcctccttctatgagctcttgattcaaattgtggtaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catctgggaaatggaggctctactcctccttctatgagctcttgattcaaattgtggtaa 260
Query: 541 ctcattctgtcaagcatacatagatgagttcttttatgcagttgaatatgaaatttaat 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctcattctgtcaagcatacatagatgagttcttttatgcagttgaatatgaaatttaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space: 581932
Effective search space used: 581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
