BAC Information

Click to search

BAC

Clone NameMSMg01-076H20
Chromosome1 (Build37)
Map Location 96,782,055 - 96,782,435
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076H20.T7 (MSMg01no076_h20.b1)MSMg01-076H20.TJ (MSMg01no076_h20.g1)
ACCAG299055AG299056
length715710
length of high quality
(start - end)
381 (65 - 445)299 (70 - 368)
definitionCHROMAT_FILE: MSMg01no076_h20.b1 PHD_FILE: MSMg01no076_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:29 2005CHROMAT_FILE: MSMg01no076_h20.g1 PHD_FILE: MSMg01no076_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATCCGCGGAATCAT
TATTGTAACAATTACATTTCATTAATTAATTAATGACCAAGAATTAAATA
GTTTCCCATAACTTTGTCAATACTTTTAAAACTTTCATAATGGGTGCCCA
GCCAGTAAACTTTGGATGTAATTATAATTAATCTTAGCATCAGATAAAAT
ATTTTAATGTCTCTATAGAGCTAATATTCAATTTCTCATCAGTATTCATG
ACAGAGAATATAACTATTAGTTATTCAGAGAACATTTTCTGATGCAGCCA
CCATATATTTATTCTTTCCTTCTTCTGTCTTAGCAATATCACATATGCCT
TTAAAAGGTTTTAGCTGCATATATATCANAAGATGGCCTAGTCGGCCATC
ACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGCACA
GGGCAACACCAGTGTCAATAAGGCCCAGTGCTTGCCCAGGTCAGCGGCCT
TGCACATCCCTCCATTTCCTCTCCCCTTCCCCCCTCTTTCTCCCCCCCCC
CCTTACCCATCTTCCATATCTCCCTTTCCTTTTACTTCTCCTTCCACCCC
TTCCGGCCTTTACCCCCTCCATTTCCACCTTTCCCCCCCTCCATATCCTC
CTACCTTTTATTTTCCACCGCCTTACGCCCGCTTTTCCATTATCTTCTAT
GTTCTCTCCTCCCTC
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCTGACAAATGGAGATTCTCCACAGATACT
TAAAAGAACAGCTAAGCTACACTCATACAAGAATTTATCAGGGCCCAGGA
AATAGGGGGGTTGTGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGCA
GAACCTCCTGGTGCTAGCTTTCACAAGGCTCAAGGGAGTAGCTCAAATTG
TGACTAGGGTGTGAAAACCTTGCCTATCATTAAGCTGACCCTATGCAGGA
TTGCTTTATCTTTACTGTAAACATTTACCTGGTTCCTACAAGTCCTTTTG
AAGTCATTCCTTTGCTTTGTGCCAGGTAACTTCAATGTACTTTGCCTACT
GTGACATCCTACCCCCTGTATTTTCTGCATTATATAAGTCTGGTGTTCAC
TTTGTGACCATACATTCAGATTCTACACAATCTCGAGCGTTGAGCTGTCT
GTCATTCACAGACTCCTTGCCCATCTGCAACCAGAGACCCGTTCTACATA
GACAAGGCACCTTGAGGCCCTGTGCAAGAGGCTCAATGCCCCAGTGTAGG
GGAATGTCACGGTGGCGAGCCCGTATCGCATTGCCGCATGGCCCATCACC
CTTTAGACGCAGGCCCCGGCTTTGTTCTCGTCTCTTTCTTTATCCCTCTT
CCGGCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_h20.b1 MSMg01no076_h20.b1 CHROMAT_FILE:
MSMg01no076_h20.b1 PHD_FILE: MSMg01no076_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:29 2005
         (381 letters)



>mm_chr1_96781855_96782635
          Length = 781

 Score =  716 bits (370), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcattaattaattaatgaccaagaattaaatagtttcccataactttgtcaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttcattaattaattaatgaccaagaattaaatagtttcccataactttgtcaatact 260

                                                                       
Query: 61  tttaaaactttcataatgggtgcccagccagtaaactttggatgtaattataattaatct 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaatctttcataatgggtgcccagccagtaaactttggatgtaattataattaatct 320

                                                                       
Query: 121 tagcatcagataaaatattttaatgtctctatagagctaatattcaatttctcatcagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcatcagataaaatattttaatgtctctatagagctaatattcaatttctcatcagta 380

                                                                       
Query: 181 ttcatgacagagaatataactattagttattcagagaacattttctgatgcagccaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ttcatgacagagaatataactattagttattcagagaacattttctgatgcagtcaccat 440

                                                                       
Query: 241 atatttattctttccttcttctgtcttagcaatatcacatatgcctttaaaaggttttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttattctttccttcttctgtcttagcaatatcacatatgcctttaaaaggttttag 500

                                                                       
Query: 301 ctgcatatatatcanaagatggcctagtcggccatcactggaaagagaggcccattggac 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcatatatatcaaaagatggcctagtcggccatcactggaaagagaggcccattggac 560

                                
Query: 361 ttgcaaactttatatgcccca 381
           |||||||||||||||||||||
Sbjct: 561 ttgcaaactttatatgcccca 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)