BAC Information

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BAC

Clone NameMSMg01-076L16
Chromosome1 (Build37)
Map Location 66,984,023 - 66,984,257
singlet/doubletsinglet
Overlap geneMyl1
Upstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
Downstream geneLOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L16.T7 (MSMg01no076_l16.b1)MSMg01-076L16.TJ (MSMg01no076_l16.g1)
ACCAG299236AG299237
length707734
length of high quality
(start - end)
57 (111 - 167)235 (74 - 308)
definitionCHROMAT_FILE: MSMg01no076_l16.b1 PHD_FILE: MSMg01no076_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:48 2005CHROMAT_FILE: MSMg01no076_l16.g1 PHD_FILE: MSMg01no076_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTATATTGTCCTTATTGATTTACACATACTGAAGAATTCTTACA
TCACTAACATGACGCCTATTTAGCCACAGTGTTTTTTAAAAATGTGTTCC
CATTGGCCTACTATCAAGACCTCACCTTATGACCAAATTACACATCTATG
GGTTAATCTCTCAGGACCTAAATGACCCACTCACCCCTCAAGAGCTGCGA
TTATGACCTAGGGACTAATGCTTAATACACGCGACTTTTGGACAAACATT
TGATACCTAAATCTTGCCTATCTGCTTACGAATCCCAACTGTACCTAAAG
TCTATTTCGTAAAGCAAGAACTCTACTTATCTGTTTCTCTATGCCTCGAA
TAATTACTGCAGCTCTCCCCGCCGATTTCCTATAATTGTGTTCCGCCTCA
CCGCCCTTCTTTCTTTTGCCCCACCCGATCACCCCCTGAATCGTTCCATG
CCCCCCCTCGCTTTGCCTACTGCCTTCCCTTTCTTTCTCACGCCCTCCCA
ATCTCGACTTCTCTTTCTCCTTCTCTTTTCCCCTATTTTCCTCACACTTC
CCCCCTTTTCCCTCTACTTCCCTCTCATCCCCCCCCCCCAATTCTCTTCC
TTTTTTTTTCCCCCCCCTATCCCACCATTTCCCTTCTCTCCATTTTCCCC
CTCCCCC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGATAAGAGGGTTTCTGATAAAGG
CTGAGAAGAATGTCTAATGTGACAAGAGGAGAGAAGAGTGGTTGCATGCC
AGGCAGAAAAGATTTGAGACACACCAAATGATGATCTCTAACCAAGGCCC
TAACCAAATGGCTGTGTAATCAGATCACACGTTTGCTCAAAGAGCTGACG
ATATTCCTATTTAACAAGGAGGAGAAGCAAGACAGGGGTTTGCCATTCTA
ACAGTGGATGGGAGGTGAGTTGTTTTCTCTCCTTCACTTCCTGATACATA
CTACATCATCTATCCCTCACCGCTTAACTCCCTCCCTGTATCACCTATAC
CCTACTTTTTCTTGCCCCCCCCGCCTTGCCTTACCCTCACCTCCTGATCT
TCACTCATCATTCCACTCACCCATTTCTTCCTCTGTTCCTTCCGCCTTTT
ACCCTAACCCCCCTCTTCTTTCGCCTTTTTCTTTCCCACCCCCTTTCCCC
TTTCCTCCTTTTTTCCCCCCCCTTTCCCACACTTCTCCCCACCGTCCCTC
CCTTACCTGTCTTCCCTTTCACTCTTCCTTTTTTCTTCTTTCTTCTTCTC
CCCCCTTCCTACCTTTTTTTTCCCCTATTCCCTTGCTTGTTTTTCTTCCT
CCCTCTCCGTTTCCTCCCCTTTCAGCCACTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l16.g1 MSMg01no076_l16.g1 CHROMAT_FILE:
MSMg01no076_l16.g1 PHD_FILE: MSMg01no076_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:48 2005
         (235 letters)



>mm_chr1_66983823_66984457
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggataagagggtttctgataaaggctgagaagaatgtctaatgtgacaagaggagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttggataagagggtttctgataaaggctgagaagaatgtctaatgtgacaagaggagag 376

                                                                       
Query: 61  aagagtggttgcatgccaggcagaaaagatttgagacacaccaaatgatgatctctaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagagtggttgcatgccaggcagaaaagatttgagacacaccaaatgatgatctctaacc 316

                                                                       
Query: 121 aaggccctaaccaaatggctgtgtaatcagatcacacgtttgctcaaagagctgacgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaggccctaaccaaatggctgtgtaatcagatcacacgtttgctcaaagagctgacgata 256

                                                                  
Query: 181 ttcctatttaacaaggaggagaagcaagacaggggtttgccattctaacagtgga 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttcctatttaacaaggaggagaagcaagacaggggtttgccattctaacagtgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)