BAC Information

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BAC

Clone NameMSMg01-076M22
Chromosome1 (Build37)
Map Location 139,414,321 - 139,414,691
singlet/doubletsinglet
Overlap genenone
Upstream geneKif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076M22.T7 (MSMg01no076_m22.b1)MSMg01-076M22.TJ (MSMg01no076_m22.g1)
ACCAG299296AG299297
length754645
length of high quality
(start - end)
376 (39 - 414)302 (65 - 366)
definitionCHROMAT_FILE: MSMg01no076_m22.b1 PHD_FILE: MSMg01no076_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:55 2005CHROMAT_FILE: MSMg01no076_m22.g1 PHD_FILE: MSMg01no076_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATAGTTCACAGAATCCGCGGAATTC
ACTAAAGAAGCCTCAGGTAGCTCAATAACTTCTTGCCCTTCTTTCTTTCT
TAGAGAGCAGCATAGAACAAAATGTTTCCTGTACATTATGTTATGTGCTC
AATATATTGTTAATTCATTCAAGATTAAAGTGAATTAAAAAGAGGGGAAG
TTGGAAAATATGCCAGTACATCTTAGTTTTAACAAGTTGCTAAACTCTGA
CAACCTTTGTTAATCTTGAGTGACTCCAAATGACCACTTAATAACCGTTT
TGTTTTAGTTATCCTAATTGCAGAAATCAACCTTTCTGATGAGCCCTTGG
AAATAAAATTGACTTTCATGATAGCTTTCTTAGCATCATGGTCAGGTTTT
TTTGTTTTTTTTTTCTGCCCCCCCGTTTTGATCCTCCTCTTTCTTCTTTC
TACCCTTTCTTTATTTTTCTTCCTTTCCCTCACTTTTCTTCCTCTTTCTC
CTCTATCTTTTTCTTTTTTTTCTCTTTTCCCCTCTCTTCCTATTCCTCTT
ACTCTCCTCTTCTTCCACTATACCATTTCACATTTTCTTTACTTTTACTC
ACCTTATTTTCCACTCTCTTCCTTTTTTCCTTTCCTTTCTTCACTCTCTT
TTCTCTTTTTTATTTTCTTCTCGTTCTCTCTTCTTTCTCATTTTTTACCC
TACAATCTTTCCTTTCCACATTTTTTCTTTTCCCTCTCTCCTCCCTTTCT
TTTG
CATAAGTGGAGGCTGGCGCCGCTGGCGTCCAXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGCTGAGAACACCTGTA
AAAATGTTCAACATCCTTAATCATCAGAGAAATTCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGGTCAAAAATTCAAGT
GACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGACCACTCCTCCACTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGATGGT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGTTCCAACCGATAATAAGGACACATGCTC
CACTATGTTCAAAACAGCCTTTATTTATAATAAGCCCGAAGCTGGAAAGA
ACCCATGAAGCCACTTCAATAGGGAATGGATACAGGAAAATGTGGGCACA
TTTTACCCAATTTGAGTACCACTCCCCCTATTAAAAAAAAAGGAAATTTT
TGAAAATTTCCCAAGCCAAATGGGATGGGCCTGGGAGGGGCACTCATCTT
TGGAGTGGAGTAAACCCCAATTCCCAAAAAAAACTCCTCCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_m22.b1 MSMg01no076_m22.b1 CHROMAT_FILE:
MSMg01no076_m22.b1 PHD_FILE: MSMg01no076_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:55 2005
         (376 letters)



>mm_chr1_139414115_139414891
          Length = 777

 Score =  671 bits (347), Expect = 0.0
 Identities = 365/371 (98%), Gaps = 1/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcactaaagaagcctcaggtagctcaataacttcttgcccttctttctttcttaga 66
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcactaaagaagcctcaagtagctcaataacttcttgcccttctttctttcttaga 266

                                                                       
Query: 67  gagcagcatagaacaaaatgtttcctgtacattatgttatgtgctcaatatattgttaat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gagcagcatagaacaaaatgtttcctgtacattatgttatgtgctcaatatattgttaat 326

                                                                       
Query: 127 tcattcaagattaaagtgaattaaaaagaggggaagttggaaaatatgccagtacatctt 186
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcattcaagatgaaagtgaattaaaaagaggggaagttggaaaatatgccagtacatctt 386

                                                                       
Query: 187 agttttaacaagttgctaaactctgacaacctttgttaatcttgagtgactccaaatgac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agttttaacaagttgctaaactctgacaacctttgttaatcttgagtgactccaaatgac 446

                                                                       
Query: 247 cacttaataaccgttttgttttagttatcctaattgcagaaatcaacctttctgatgagc 306
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cactaaataaccgttttgttttagttatcctaattgcagaaatcaacctttctgatgagc 506

                                                                       
Query: 307 ccttggaaataaaattgactttcatgatagctttcttagcatcatggtcaggtttttttg 366
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 507 ccttggaaatgaaattgactttcatgatagttttcttagcatcatggtcaggtttttttg 566

                      
Query: 367 ttttt-ttttt 376
           ||||| |||||
Sbjct: 567 tttttgttttt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 777
Length adjustment: 9
Effective length of query: 367
Effective length of database: 768
Effective search space:   281856
Effective search space used:   281856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)