CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTATAGCTACAATTCCCTGACTAAATCAGAACCAGTCACTCTTCTGCAA
AAAAACCCACTGAACATCTGGCCACAGATGTCTGTCTGTCCAGACTATAA
TAAAGAACTGAAAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACT
GACTGCTCTTCTGAAGGTCCTGAGTTCAAACCCCAGCAAGCACATGGTGG
CTCACAACCACCTGTAATGAGATCTGGTGCCCTCTTCTGAAGACAGCTAC
AGTGTACTTACATATAGTAATAAATAAATCTTTGGGCTGAACCGGAGCAA
GTGGGGCCAACTAGAGTGAGCAGAGGACCTAAATTCAATTCCCAACAACC
ACATGAAGGTCCACAACCATATGAACAGCTACAGTGTACTCATATACATA
AAATAAATAAATAAATATTTTTTAAAAAAGAAGAAGAACTGAAAGACTGA
GTGTGTAGTTCAGTTAGTAGAGCTGAGTCTGCCGGGTAGGCACAAAATCC
TGGGCTCCATCCCTGTGCTATATAAAACCCATTTGACATGTAATTGTAAC
CCCAGCACCTAGGAGATAAGAGGCTGGAAGTTCTTATGTTCAAGGTTGTC
CTCAGCTATACAGTAAGTTGGAAGCCAACCTGGGTTACATAAAATTCTGC
CCCTNTACATTATCTCCACAGACAACGATTA

CGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGTACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTCGGCATTTATCCAGAAGATGCCCCATCTCGTAAGAAG
GACACGTGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAATTTGCTAA
ACACATGAAACTCAAGAAGAATGAAGACTGAAGT

Query= MSMg01no076_m24.b1 MSMg01no076_m24.b1 CHROMAT_FILE:
MSMg01no076_m24.b1 PHD_FILE: MSMg01no076_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:55 2005
         (572 letters)



>mm_chr1_85302314_85303285
          Length = 972

 Score = 1085 bits (561), Expect = 0.0
 Identities = 567/569 (99%), Gaps = 1/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatagctacaa-ttccctgactaaatcagaaccagtcactcttctgcaaaaaa 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttatagctacaaattccctgactaaatcagaaccagtcactcttctgcaaaaaa 263

                                                                       
Query: 64  acccactgaacatctggccacagatgtctgtctgtccagactataataaagaactgaaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acccactgaacatctggccacagatgtctgtctgtccagactataataaagaactgaaag 323

                                                                       
Query: 124 gggggctggtgagatggctcagtgggtaagagcactgactgctcttctgaaggtcctgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggggctggtgagatggctcagtgggtaagagcactgactgctcttctgaaggtcctgag 383

                                                                       
Query: 184 ttcaaaccccagcaagcacatggtggctcacaaccacctgtaatgagatctggtgccctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcaaaccccagcaagcacatggtggctcacaaccacctgtaatgagatctggtgccctc 443

                                                                       
Query: 244 ttctgaagacagctacagtgtacttacatatagtaataaataaatctttgggctgaaccg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctgaagacagctacagtgtacttacatatagtaataaataaatctttgggctgaaccg 503

                                                                       
Query: 304 gagcaagtggggccaactagagtgagcagaggacctaaattcaattcccaacaaccacat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagcaagtggggccaactagagtgagcagaggacctaaattcaattcccaacaaccacat 563

                                                                       
Query: 364 gaaggtccacaaccatatgaacagctacagtgtactcatatacataaaataaataaataa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaggtccacaaccatatgaacagctacagtgtactcatatacataaaataaataaataa 623

                                                                       
Query: 424 atattttttaaaaaagaagaagaactgaaagactgagtgtgtagttcagttagtagagct 483
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcttttttaaaaaagaagaagaactgaaagactgagtgtgtagttcagttagtagagct 683

                                                                       
Query: 484 gagtctgccgggtaggcacaaaatcctgggctccatccctgtgctatataaaacccattt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagtctgccgggtaggcacaaaatcctgggctccatccctgtgctatataaaacccattt 743

                                        
Query: 544 gacatgtaattgtaaccccagcacctagg 572
           |||||||||||||||||||||||||||||
Sbjct: 744 gacatgtaattgtaaccccagcacctagg 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)