BAC Information

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BAC

Clone NameMSMg01-078A03
Chromosome1 (Build37)
Map Location 90,147,805 - 90,148,284
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078A03.T7 (MSMg01no078_a03.b1)MSMg01-078A03.TJ (MSMg01no078_a03.g1)
ACCAG299445AG299446
length705711
length of high quality
(start - end)
457 (47 - 503)490 (79 - 568)
definitionCHROMAT_FILE: MSMg01no078_a03.b1 PHD_FILE: MSMg01no078_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:11 2005CHROMAT_FILE: MSMg01no078_a03.g1 PHD_FILE: MSMg01no078_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGCGTCTCGACCTTTTGCTGACGAAGGGCTTCTCCACATGGA
TTAACTTTGCATTTTCCTACTTTAAGGAGTTGGTAGGGGTAGGCTTGTTT
GCCATGATCCTATTGCTTTTGCTCTGGATGGTCTGTAAACTTAAAGCCCA
AACAAAAAGGGACAAGATGGTGATAGCCCAAGCACTTGCTGCGTTAGAAC
ACGGTGCCTCCCCTGATATATGGTTATCTATACTTAAGCAATAGGTTGCT
GGTCGCTCAGCTCTTGCACCCCACGAGGCTAGTCTCATTGCATGGGATAG
AGTGAGTGTGCTTCAGCAGCCCGAGAGAGTTTCACGGCTAAGCACTGCAG
TATAAAGGCTCTGCGGCATAAAATGAGCCTATTCTAGGGAGACATGTCAT
CTTGTATGAAGGTTGAGTGTCCAAGTGTCCTTCCCCCAGGAAAAAACAAC
ACGGGAGCAGACCAAGACCCCTCCAGTTGACAAGCCTGGGAGAAGATTTT
GTGCAATGCCTCTATTTTTTCCACACTGGGGATTTGACCTCTATCTCCAC
TCTCAGTACTGGGTGGCCTGTTGCCTTTTAAATAAAAGAAAAGGTGTAGG
TGTTAGCTGATAGAAGAGGTCTTTAATAAGGGTAGAACTAATACATTTAT
TTCTT
CTTTTCGATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTTGCTCTGATCCTAGGCG
GTTTGCCCAGAGTTTAACTTCGACGAGGTTGTCTCTCTCATCCAGAAGCT
CTGTGAGAACATTGGGGCCATGGACCTGCAGCATGACAGGGCTGCGGTTA
CCTGGATAGGCATCTTCCTCCAGATGCGGGTCAAGGAGCTGGAGGACAAG
GTAACCAAGTTCAGCAGGGGATGCTTGGATTGGTACTGGGACTGACCTGT
GTAGCACACACGGAGAATGACCACTTCCACCCAAACTAGGAGTGCTAAAG
GGGATAAAACAGAGTTCTAGAATGAGAAAGCTGTTGAGATGTAACTAGCT
CAGCGAGTAGGTGAGGGACTACTGGTGCCAGGCTCTTTTCAGCGAAGCAC
AGTGAAGACACACTGAACATGTAGGAGGAAAAGACCCATAGGGCTTACAG
AGAGGGCTTTTGGGAGTGGGGTGTCTAACCAACACACCATGTTTCCCAAG
ATAGGAGTATCCTTCAGGGGCCCAGAAATACCTTTATTTCTGTCTCTGTC
ATAAAGCACACTGACCAAACACAATTTACCAAAGTCAATGGTCAAATAGG
TTATAGCTCATCACTGAGGGACATTAAGTAGCTAGTGAAATTATATCCAC
AGTTAAGAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_a03.g1 MSMg01no078_a03.g1 CHROMAT_FILE:
MSMg01no078_a03.g1 PHD_FILE: MSMg01no078_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:11 2005
         (490 letters)



>mm_chr1_90147601_90148484
          Length = 884

 Score =  787 bits (407), Expect = 0.0
 Identities = 465/487 (95%), Gaps = 8/487 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttgctctgatcctaggcggtttgcccagagtttaacttcgacgaggttgtctctctcatc 64
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 ttgctctgatcctaggtggtttgcccagagtttaactgcgacgaggttgtctctctcatc 264

                                                                       
Query: 65  cagaagctctgtgagaacattggggccatggacctgcagcatgacagggctgcggttacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 265 cagaagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgtcacc 324

                                                                       
Query: 125 tggataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 tggataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagctc 384

                                                                       
Query: 185 agcaggggatgcttggattggtactgggactgacctgtgtagcacacacggagaatgacc 244
           ||||||||||||||||     ||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 agcaggggatgcttgg-----tactgggactgacctgtgtagcacacacggagactgacc 439

                                                                       
Query: 245 acttccacccaaactaggagtgctaaaggggataaaacagagttctagaatgagaaagct 304
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acttccatccaaaccaggagtgctaaaggggataaaacagagttctagaatgagaaagct 499

                                                                       
Query: 305 gttgagatgtaactagctcagcgagtaggtgagggactactggtgccaggctcttttcag 364
           |||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||
Sbjct: 500 gttgagatgtaactag-tcagtgagtagatgagggaccactggtgccaggctcttttcag 558

                                                                       
Query: 365 cgaagcacagtgaagacacactgaacatgtaggaggaaaagacccatagggcttac-aga 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 559 tgaagcacagtgaagacacactgaacatgtaggaggaaaagacccatagggctt-ctaga 617

                                                                       
Query: 424 gagggcttttgggagtggggtgtctaaccaacacaccatgtttcccaagataggagtatc 483
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 618 gagggcttttgggagtcgggtgtctaacctacacaccatgtttcccaagataggagtatc 677

                  
Query: 484 cttcagg 490
           |||||||
Sbjct: 678 cttcagg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 884
Length adjustment: 10
Effective length of query: 480
Effective length of database: 874
Effective search space:   419520
Effective search space used:   419520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)