TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACATGTACCACACAGTTGCTCTGTTACTAACTAAGTATAATAAA
ATCATTGGTGTCTTTATGTCTTTCTTCTCATATAATTTCTTTCTTACCTT
TCAGATCTTAGCAGAGATTTTGTTTCCGATGGGCTTAGGCTTTGGGTGTC
CAACTGCTCATCATTTTCTATGCTACAAGTGTCTACTTTATATTAACTGT
CATGAAATTTATTGCATATATAGAATAAAAGGTATCACTCACAAATCGTA
ATTAAAAGTTTTGGATCAAGGTGGGCGTGGTGGCACATGCCTTTAATCCC
AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTAAGTTCAAGGCCAGCCTG
GTCTACAGAGTGAGTTCCAAGACAGTCAGGGCTATGCAGAGAAACTCTGT
CTCCAAAAACAAACAAACAAACAAAAAGGATTAATTTCCTTGTACCTTAT
CCTTAAATGCCTGTATAACTCCTCCATATTTTTGTATTTAAAATAATTTA
AACATTGTGTACAAAACCAAACTGACTCTTTAGGTTAATTATGAATGTTA
GGATGTGCAAAGTGGAATGTTTGTTTGAATGGCACCTATTATTTATATTG
AAATGTCCTTGTTTCCAAGTCAATGCAAGCATTCCAAAATGAAATGCATT
GGTA

CCCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATT
TTTAATGGGGTTATTTGATTTTCTTGCTTTGCTCCTTCTTAGAATTGGGA
AAAAACACCCAGGGAAGGAGTTATAGAGACAAAGTTTGGAGCTGTGATGA
AAGGATGGACCATCTAGAGTCTGCCATATCCGGGTATCCATCCCATAATC
ACCTTCCAAACGATGACACCATTGCATACACTAACAAGATTTTGCTGAAA
GGACCCAGATAGAGCTGTCTTTTGTGAGACTACGCCGGGGCCTAGCAAAC
ACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGTGCCCCCA
ATGGAGGAGCTACAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAATCCT
ATAGGTGGAAGAACAATATGAACTAACCAGTACCCCCCCTGGAGTTTGTG
TCTCTAGCTGCATATGAATCATAAAATGGCCTAGCTGGCCATCAGTGGAA
AGAGAGGCCCATGATTCGTGTCAATTTTATATGTCTCACTACAGGTGAAT
GACACGGGTAAGCATTGGTAGTGGCCGCTTTGTTGCAGTCCCCCCTTTTT
TTCCCCCCTTTTCTCCCCTTTTCCTTCTTTTCCCTTTTATTTTTTTTTCT
TTTCTCTTTTT

Query= MSMg01no078_a07.b1 MSMg01no078_a07.b1 CHROMAT_FILE:
MSMg01no078_a07.b1 PHD_FILE: MSMg01no078_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:12 2005
         (660 letters)



>mm_chr1_150424281_150425340
          Length = 1060

 Score = 1216 bits (629), Expect = 0.0
 Identities = 650/657 (98%), Gaps = 1/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacacatgtacca-cacagttgctctgttactaactaagtataataaaatcattg 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcacacatgtacaaacacagttgctctgttactaactaagtataataaaatcattg 263

                                                                       
Query: 64  gtgtctttatgtctttcttctcatataatttctttcttacctttcagatcttagcagaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgtctttatgtctttcttctcatataatttctttcttacctttcagatcttagcagaga 323

                                                                       
Query: 124 ttttgtttccgatgggcttaggctttgggtgtccaactgctcatcattttctatgctaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttgtttccgatgggcttaggctttgggtgtccaactgctcatcattttctatgctaca 383

                                                                       
Query: 184 agtgtctactttatattaactgtcatgaaatttattgcatatatagaataaaaggtatca 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 agtgtctactttatattaactgtcatgaaatgtattgcatatatagaataaaaggtatca 443

                                                                       
Query: 244 ctcacaaatcgtaattaaaagttttggatcaaggtgggcgtggtggcacatgcctttaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcacaaatcgtaattaaaagttttggatcaaggtgggcgtggtggcacatgcctttaat 503

                                                                       
Query: 304 cccagcacttgggaggcagaggcaggcagatttctaagttcaaggccagcctggtctaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccagcacttgggaggcagaggcaggcagatttctaagttcaaggccagcctggtctaca 563

                                                                       
Query: 364 gagtgagttccaagacagtcagggctatgcagagaaactctgtctccaaaaacaaacaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 564 gagtgagttccaagacagtcagggctatgcagagaaactctgtctccaaaaacaaacaac 623

                                                                       
Query: 424 caaacaaaaaggattaatttccttgtaccttatccttaaatgcctgtataactcctccat 483
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 624 caaacaaaaaggattaatttccttgtaccttatccttaaatgtctgtataactcctccat 683

                                                                       
Query: 484 atttttgtatttaaaataatttaaacattgtgtacaaaaccaaactgactctttaggtta 543
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 684 atttttgtatttaaaataatttaaactttgtgtacaaaaccaaactgactctttaggtta 743

                                                                       
Query: 544 attatgaatgttaggatgtgcaaagtggaatgtttgtttgaatggcacctattatttata 603
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attatgaatgttaggatgcgcaaagtggaatgtttgtttgaatggcacctattatttata 803

                                                                    
Query: 604 ttgaaatgtccttgtttccaagtcaatgcaagcattccaaaatgaaatgcattggta 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgaaatgtccttgtttccaagtcaatgcaagcattccaaaatgaaatgcattggta 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)