BAC Information

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BAC

Clone NameMSMg01-078B15
Chromosome1 (Build37)
Map Location 142,041,199 - 142,041,528
singlet/doubletsinglet
Overlap geneCfh
Upstream geneDennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
Downstream geneKcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078B15.T7 (MSMg01no078_b15.b1)MSMg01-078B15.TJ (MSMg01no078_b15.g1)
ACCAG299517AG299518
length683679
length of high quality
(start - end)
---328 (190 - 517)
definitionCHROMAT_FILE: MSMg01no078_b15.b1 PHD_FILE: MSMg01no078_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:19 2005CHROMAT_FILE: MSMg01no078_b15.g1 PHD_FILE: MSMg01no078_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CCCAATATACTCTATATCTTCTATAACCCACCTCCGAAGCAATGACTTAC
AGCATTTCTTTTTGTTGAGATGCAGATCACCTTTTACCATAAATTCCATG
ACTCCTCCTACAAATCGAATCCGCATCACTCATATGTGATCTGGCTGATC
TTGAAAATTCATTGCAACTAGAGGAATCTTCTGCTATTGTTTATGTTTGA
CTGAGAAAGAGCTGTTATCCTGTGCTTTTCTCATAAGAGATGACACACTT
CTGTCACACACATGATAGCCACCTATGCCCATACCACTACATGTAAATAT
CATCCAATTCCTGTGAAGACGATTCTTCCCATGAGTGACTTTCCAAGATT
CTGTATGACATCCTGAAGCCGTAACAACATGCATAGCTGCCCTATGTAAA
AGTGTTCTATATTTGTGTCTACTACTCTCCTGTCAATCACATACCCTTTA
TTTGTGTGTCTTTTACTTGAGATTCATAGATACATCTTCGGAGCAGGAGA
TCATGATCCTGACATGATTATCCCTTCACACAGCAGATTTCACACTGTAT
CTATTCACTGAGAAGTAGATAGTAGTCCTGAAACTTATGATACGCTTTAG
TGGAATACAATTTGCTAAACGCATGATACTCGT
CATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGCCAAATAGATGTACAAAAACGGGCTGTG
ATGAGAGATGTGGATAACTGCATGATTAGCCTATCTGTTTTTTAGATTAG
ATTAGATTTATAAGATTTATATTATAACTGAAGAAAGGGTAATGATAGAG
ATTGTCAATTTATAAACTGAACATCCCTTTGAATTCTGCATATAGGCCTG
AGTCATTCACTTCTATGATTTTTTATTTAAACTACAGAATTATTACCATA
AGGGGCAGCTTTTAATTACAGAGGTTTGCTTGAATGCCACAAAGTCCAGA
AGTAAAAACAGTAATGAAAAGTACATGCTCATATAAACCAACTATAAGGC
AAATACATTTATTTACGCAGAAACTGTAGTCAATTAAAATAATTTTCTAA
TGTAGCAATGGTATAAGTTAGCAGATCTAGGCAAAGATGATTTAAGACAC
ACAAAACACAAAACATATAATGCACATTTGAGGAATGGCTTGGTGTATCA
GGAGTTTAGATTCATGATTTAGTCCCAAATTATATTGTTTCTTCCTTATT
CCTTATGTTTTCCCAAATAAGTCTAAGAATTTGTTTATTTCAAAGAGAAA
GATGTATAAACTTGAATCTGTGACTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_b15.g1 MSMg01no078_b15.g1 CHROMAT_FILE:
MSMg01no078_b15.g1 PHD_FILE: MSMg01no078_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:19 2005
         (328 letters)



>mm_chr1_142040999_142041728
          Length = 730

 Score =  596 bits (308), Expect = e-175
 Identities = 324/330 (98%), Gaps = 2/330 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgatagagattgtcaatttataaactgaacatccctttgaattctgcatataggcct 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 taatgatagagactgtcaatttataaactgaacatccctttgaattctgcatataggcct 471

                                                                       
Query: 61  gagtcattcacttctatga--ttttttatttaaactacagaattattaccataaggggca 118
           ||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gagccattcacttctatgattttttttatttaaactacagaattattaccataaggggca 411

                                                                       
Query: 119 gcttttaattacagaggtttgcttgaatgccacaaagtccagaagtaaaaacagtaatga 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 410 gcttttaattacagaggtttgcttgaatgccacaaagtccagaagtaaaaagagtaatga 351

                                                                       
Query: 179 aaagtacatgctcatataaaccaactataaggcaaatacatttatttacgcagaaactgt 238
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 350 aaagtacatgctcatataaaccaactataaggcaaatacatttatttatgcagaaactgt 291

                                                                       
Query: 239 agtcaattaaaataattttctaatgtagcaatggtataagttagcagatctaggcaaaga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agtcaattaaaataattttctaatgtagcaatggtataagttagcagatctaggcaaaga 231

                                         
Query: 299 tgatttaagacacacaaaacacaaaacata 328
           ||||||||||||||||||||||||||||||
Sbjct: 230 tgatttaagacacacaaaacacaaaacata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 730
Length adjustment: 9
Effective length of query: 319
Effective length of database: 721
Effective search space:   229999
Effective search space used:   229999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)