NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCCTCCTCGATAAGGAGGCAGAGCTAAAATTAATACAAATGC
AAGCATGAAAGTTCTCAGAATTGATGCTGCTTAGAATCTACACAAACTTT
GTGTTTTATTCACAGTTGTTGGCACATGTTCAAAAGACAGATGCCTACTG
CTGAGCTGCTCAGAAAGCAAAGCCATAGGGAGGGAAACACAGTATGAGTT
ATTTTTTTGATAGATAATATCATGATGCATATTTCAAATTAGAATGGCCA
CTGAATCAAGTACAAGTGAAATAAATTGGAGTAGGGTGATATGATGGTAC
TATCTGGATTCCAGGACTAACCTAATAATCACGAGAAAAAAAAATGAGTG
ATAGTGGTACACTGACATGTTAACAGTTGGGTAGATTCTCAGTTGACCAT
GAGCATGTCCAAATGAGAACCCTGTGAAAGGAAGATATTACACAAAGGGT
TTCTGATGCCTTTTTGAAGGTGTCTCAGGCCCCATTTCCCTTTCTGCTTC
CTGTAGTTCATGTGAGATAGCCCTACACAGAGTTGAGATACAGAATAAGG
TGCTGTGAAGTTTTGTGGCACCAAGTCACACATACCACCAATTTCATTGA
TTTCTTTAAAGTGATGCTGTTAAAGAGAGGAGCACAGCATTTTAAA

CTTCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGATGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAAT

Query= MSMg01no078_c07.b1 MSMg01no078_c07.b1 CHROMAT_FILE:
MSMg01no078_c07.b1 PHD_FILE: MSMg01no078_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:22 2005
         (535 letters)



>mm_chr1_11416874_11417806
          Length = 933

 Score =  907 bits (469), Expect = 0.0
 Identities = 515/531 (96%), Gaps = 2/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcctcctcgataaggaggcagagctaaaattaatacaaatgcaagcatgaaag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaattcatcctcctggataaggaggcagagctaaaattaatacaaatgcaagcatgaaag 674

                                                                       
Query: 65  ttctcagaattgatgctgcttagaatctacacaaactttgtgttttattcacagttgttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttctcagaattgatgctgcttagaatctacacaaactttgtgttttattcacagttgttg 614

                                                                       
Query: 125 gcacatgttcaaaagacagatgcctactgctgagctgctcagaaagcaaagccataggga 184
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 613 gcacatgttcaaaagacagatgactactgctgagctgttcagaaagcaaagccataggga 554

                                                                       
Query: 185 gggaaacacagtatgagttatttttttgatagataatatcatgatgcatatttcaaatta 244
           |||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gggaaacatagtatgagtta--tttttgatagataatatcatgatgcatatttcaaatta 496

                                                                       
Query: 245 gaatggccactgaatcaagtacaagtgaaataaattggagtagggtgatatgatggtact 304
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 gaatggccactgaagcaagtacaagtgaaataaattggagcagggtgatatgatggtact 436

                                                                       
Query: 305 atctggattccaggactaacctaataatcacgagaaaaaaaaatgagtgatagtggtaca 364
           |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct: 435 atctggattccaggactaacctaataatcacgaggaaaaaaagtgagtgatagtggcaca 376

                                                                       
Query: 365 ctgacatgttaacagttgggtagattctcagttgaccatgagcatgtccaaatgagaacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 375 ctgacatgttaacagttgggtagattctcagttgaccatgagcatgtccaaatgagaccc 316

                                                                       
Query: 425 ctgtgaaaggaagatattacacaaagggtttctgatgcctttttgaaggtgtctcaggcc 484
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctgtgaagggaagatattacacaaagggtttctgatgcctttttgaaggtgtctcaggcc 256

                                                              
Query: 485 ccatttccctttctgcttcctgtagttcatgtgagatagccctacacagag 535
           |||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 255 ccatgtccctttctgcttcctgtagttcatgtgagatagtcctacatagag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 933
Length adjustment: 10
Effective length of query: 525
Effective length of database: 923
Effective search space:   484575
Effective search space used:   484575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)