BAC Information

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BAC

Clone NameMSMg01-078C10
Chromosome1 (Build37)
Map Location 16,196,514 - 16,363,284
singlet/doubletdoublet
Overlap geneEG665282, Stau2
Upstream geneLOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10
Downstream geneUbe2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C10.T7 (MSMg01no078_c10.b1)MSMg01-078C10.TJ (MSMg01no078_c10.g1)
ACCAG299555AG299556
length732710
length of high quality
(start - end)
265 (43 - 307)317 (68 - 384)
definitionCHROMAT_FILE: MSMg01no078_c10.b1 PHD_FILE: MSMg01no078_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:23 2005CHROMAT_FILE: MSMg01no078_c10.g1 PHD_FILE: MSMg01no078_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,363,025 - 16,363,284)(16,196,514 - 16,196,828)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAA
TTCTCCTGTGTGCGACATTAGGACCAAGAACATTGTGCGAGCCTTTTCAC
TAAGTAGAACACAGTAATGGTTTTGATCTTATATTCTTAGCTCTTAAGAA
TTCATGGATCTATTTTGTTAATTTGAAAGATTGAAATTACAGAGTGATTT
GTTCAAGATAAAAGCCTGACCACCTGACCATCTACAGCATACTAGAGAGC
CACTTTGCTCAGACATGAATATTTTCTGTAAAGATTTTTATTTGTGATCT
TACAGCATCTGTGAGTTTTGTTATGAAGATGACCCTTATACATTTTTGAC
TTTTATACTCAAATGACCTTTTGAATGACCACTATGCCTGTTACCTTGGA
ATGATAATCTCTCTACAACACAATTCATAGACTATTGAATTATCTGCGCA
TGACAATAAGCTGTGTGAGGTATGTGATGCCTGAGCGAGTTAATCCCCTT
TACCTCCTCTATTTTTTCTTTTTTTTTTTCCCCCCCCTCCCTATTTTTCT
CTTCTTTTTTTCCTTCCCCCCTTTCTCTTTCCTCTTCTTTTTTACCCCCC
CCCCCCCCCATTTTCCCTCGCTTTGCCATTCTTTTCCTTTTTTCTTTACC
CCTCCTTATTATTCCCCCCATCCCCCCACTCTTTTTCACTCTCAACCCTC
CTTCCTTCTTTTTGTCCTCCTTTTCTTCCCCT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTTTTTTTTTGTTTTTTGTTTTTCGAGACAGG
GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC
TGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCACGTGCTGGGAT
TAAAGGTGTGCGCCACCACGCCTAGCTGACACCTGACTTCTTATGAAACA
CACATGCAGCTATTGTGGGTCAGGAGTGTGCACCCAGATAAGACACAGTA
CATGGGAGCTGGAACTCTGTCAGCCAGTCCTCTTGACTAGAGAGGCAGTT
TCCCTAGAAGCCTGCAGGCAGCTGCGCTCTTTCACTTATCTACACAGGAT
TGGCAAGGAGTATGGAATAGCCCACTATGTTTAGGTTAATACAACTAGAC
AAACCAGCTGTGCTCACACAAACTTCGGGTTGCCAGCGGTTCTGGATCCT
TTACTTATAATGCGAGCTTGCTTTGGAAAATACTTTTTCTTCCAGATACT
CCAGTATGCTTTATACCTCATCTTATCTCACATATAGATGGCTTATCCTC
TTCCTCAGCACCGCACACTTCCCCTTTTATGCTGGACCTATCTTTTTTAT
TCGACTGCCCCATATTTCTTTTATAAATTTCCCTACCCTGTCAAACCCCG
TTTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c10.b1 MSMg01no078_c10.b1 CHROMAT_FILE:
MSMg01no078_c10.b1 PHD_FILE: MSMg01no078_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:23 2005
         (265 letters)



>mm_chr1_16362820_16363484
          Length = 665

 Score =  480 bits (248), Expect = e-140
 Identities = 257/260 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctcctgtgtgcgacattaggaccaagaacattgtgcgagccttttcactaagtag 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaattctcctgtgtgtgacattaggaccaagaacattgtgcgagccttttcactaagtag 406

                                                                       
Query: 66  aacacagtaatggttttgatcttatattcttagctcttaagaattcatggatctattttg 125
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 405 aacacagtaatggttttgatcttatattcttagctcttaagaattcaaggatctattttg 346

                                                                       
Query: 126 ttaatttgaaagattgaaattacagagtgatttgttcaagataaaagcctgaccacctga 185
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttaatttgaaaggttgaaattacagagtgatttgttcaagataaaagcctgaccacctga 286

                                                                       
Query: 186 ccatctacagcatactagagagccactttgctcagacatgaatattttctgtaaagattt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ccatctacagcatactagagagccactttgctcagacatgaatattttctgtaaagattt 226

                               
Query: 246 ttatttgtgatcttacagca 265
           ||||||||||||||||||||
Sbjct: 225 ttatttgtgatcttacagca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no078_c10.g1 MSMg01no078_c10.g1 CHROMAT_FILE:
MSMg01no078_c10.g1 PHD_FILE: MSMg01no078_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:23 2005
         (317 letters)



>mm_chr1_16196312_16197028
          Length = 717

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttttttttgttttttgtttttcgagacagggtttctctgtgtagccctggctgtcctgg 62
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 tttttttttgttttttgtttttcgagacagggtttctttgtgtagccctggctgtcctgg 262

                                                                       
Query: 63  aactcactctgtagaccaggctggccttgaactcagaaatctgcctgcctctgcctccca 122
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263 aactcactctgtagaccaggctggccttgaactcagaaatccgcctgcctctgcctccca 322

                                                                       
Query: 123 cgtgctgggattaaaggtgtgcgccaccacgcctagctgacacctgacttcttatgaaac 182
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 agtgctgggattaaaggtgtgcgccaccacgcccagctgacacctgacttcttatgaaac 382

                                                                       
Query: 183 acacatgcagctattgtgggtcaggagtgtgcacccagataagacacagtacatgggagc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acacatgcagctattgtgggtcaggagtgtgcacccagataagacacagtacatgggagc 442

                                                                       
Query: 243 tggaactctgtcagccagtcctcttgactagagaggcagtttccctagaagcctgcaggc 302
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggaacactgtcacccagtcctcttgactagagaggcagtttccctagaagcctgcaggc 502

                          
Query: 303 agctgcgctctttca 317
           |||||||||||||||
Sbjct: 503 agctgcgctctttca 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)