BAC Information

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BAC

Clone NameMSMg01-078I11
Chromosome1 (Build37)
Map Location 169,299,821 - 169,299,979
singlet/doubletsinglet
Overlap genenone
Upstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1
Downstream geneMgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078I11.T7 (MSMg01no078_i11.b1)MSMg01-078I11.TJ (MSMg01no078_i11.g1)
ACCAG299842AG299843
length704698
length of high quality
(start - end)
162 (142 - 303)99 (77 - 175)
definitionCHROMAT_FILE: MSMg01no078_i11.b1 PHD_FILE: MSMg01no078_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:52 2005CHROMAT_FILE: MSMg01no078_i11.g1 PHD_FILE: MSMg01no078_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGATCCGCGGA
ATTCAGTAGGTTCCTGGGCTAAGCCCTGCTCTGAGCACGTATGCTTAGTC
ACAATTAAACATTAAGTGTGCGAGTTGCCCTAGCCATATCGCAAGTCCTC
AGTATATAAAACACAGGTGCTGGTTACTTTATTGGACAGTACAGAGTATG
TTTCTGTCACGTCAGAAAATTCTACTACAAAGTTGTTTAAGAGGGATAGG
ACAGACAGGCTGCTCATTTATGTATTTACTTATATTTATTTACCTGTGTA
AGAGGGTGTGTGTGGTCTTTATTGTGTAGGTCATAATGCTCATTCATGAA
ATTGGCTTTTCTCCTACTATCATGCATTAAGGCAATCACATTCTGCATGT
TCACCCTTTCTGCCACACCCTATAGTATGATTCTTCTCTCTGGATTAAGA
TTGGTCATCTTGATAAGAATTGGATATTTTCTCATATACGCTTCGACCAA
TCTATCTTCATCCTGCCTTCTTCCTTTCCTTTTTTACCACCTTCTCCACA
TCCCTTTGTATTATGTTTTTTTTATATTATAACTTCTTCAAGATAATCCA
TGTTCAACTTTACTCCCTAATTTCTTAAACTTTCATACTATGTCTCCATT
CACCCTTTTTACCTCTTTCTCTCATTTCACGATTCACCTCCCTCCCTTCT
CCCC
NTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCTGGATTACATTGAGCATCT
AATCCAATCATAAAGCAGTTGGCTTGCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCGCTCTCTCTCTCTCTCGCTCTCACACACACACACAGACTTG
ACACTATTGTACTGGAGAGAGACTGAGATTCTAACAAGTTTTCAGCTGAT
GCTACTTGCTTGGGAGGTAGAGACAAACTTTGAGAATCTCAGATCTGGAG
GAGCCATGAAAGCTCCAGTTTATATGCCTTTGAATTGAGAAGGAAGGGTA
GTCTTTCTTATAAGTCCCTATATGGAGACTTTCCATGGACTCTAGGCCCA
CCATGGAGTAAGCACAACTGACACTGCACCTTTATGGAATAGTGACCGCG
TTTGTTCTACATGCCCTGTACCTATTTGAGGTAAAAATATAGCACATATT
TGATTATAAATATATAGTGCTCCGCTTTCAGTCTCCTTTATAGACGACTC
CCAATATATATTCCCATTAAATTGTGTATCACCTTTTGACCCTACTCTTA
TTCATTTTTTATTCGAGCCAATATACCACCCCCCCTTAATCCCACGATAA
CCAACGTTCGCTTACATTCGCCTATCTTTACATAGACTATCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_i11.b1 MSMg01no078_i11.b1 CHROMAT_FILE:
MSMg01no078_i11.b1 PHD_FILE: MSMg01no078_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:52 2005
         (162 letters)



>mm_chr1_169299621_169300180
          Length = 560

 Score =  284 bits (147), Expect = 1e-81
 Identities = 157/161 (97%), Gaps = 2/161 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtcctcagtatataaaacacaggtgctggttactttattggacagtacagagtatgt 60
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtcctcagtatataaa--acaggtgctggttactttattggacagtacagagtatgt 258

                                                                       
Query: 61  ttctgtcacgtcagaaaattctactacaaagttgtttaagagggataggacagacaggct 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 259 ttctgtcacgtcagaaaattctactagaaagttgtttaagagggataggacagacaggct 318

                                                    
Query: 121 gctcatttatgtatttacttatatttatttacctgtgtaag 161
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 319 gctcatttatgtatttacttatatttatttatctgtgtaag 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 560
Length adjustment: 8
Effective length of query: 154
Effective length of database: 552
Effective search space:    85008
Effective search space used:    85008
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)