BAC Information

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BAC

Clone NameMSMg01-078I13
Chromosome1 (Build37)
Map Location 155,406,919 - 155,564,584
singlet/doubletdoublet
Overlap geneLOC626096, Rgs8
Upstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl
Downstream geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078I13.T7 (MSMg01no078_i13.b1)MSMg01-078I13.TJ (MSMg01no078_i13.g1)
ACCAG299846AG299847
length694701
length of high quality
(start - end)
452 (64 - 515)411 (79 - 489)
definitionCHROMAT_FILE: MSMg01no078_i13.b1 PHD_FILE: MSMg01no078_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:53 2005CHROMAT_FILE: MSMg01no078_i13.g1 PHD_FILE: MSMg01no078_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,564,165 - 155,564,584)(155,406,919 - 155,407,329)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCATGAAGACCAGCCATGACTTCATCTTGAAGTTCCTGGTGATAGTCTC
AGGGCCTGATGCACAGTAGGCATGGAAATGTGTCCAATGAATGAAAGAGT
ACAGAAAGCTATCTCATTAATTAAATGGTGAAGAATACACCATTGAGTTC
CATTAAATCAAACATCCCTTAATTCATTAATTTAGGAGTCAGTGTGTAGA
AAGATACTCCCCAAAGAACTTCTGAAATGAAGTTGTCTTCGTTGCTTTTC
CTATTGCTATGATATAATACCCTGACAACATTAACCTAAGGGAGGAAGGG
TTTGTTTGGGTTCATAGCCCATCCTGGTGGGGAAGTCAGGCTAGCGAGTC
TTTGCGATGCCTGGTCACACTGCGGAAGCAGAGAGCAATGGATGCCCATG
CACATGTAGCTTCCTTTGTATGCAATCCAGAGCCCAAGCCTAGGGAATGG
TACCACCCCATTTAGTCAGTCTTTCTACCTCAATTAGCCTACCATCAATA
ATCCCTTACAGGCTTGGTCAGAGCGCGAATAATCCCTTACCAGTGTGTGT
GTGAAAACTTGTCTCTTGACGATTCTAGGTCTTGTCCAGATGACCATTTT
AAGCACATTATGAATCCACTGTTTTTCCTCGTTCCTTTGATAGN
CTTCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGTGATCTTCTGTGTGGG
AACAGTCTATTGGCAGGTCTGCCTCTGTTACGAGTACTTTCCTGGAATAT
GAGTCTGGCTGAGTGGTGTTTGTTTTCCTATCTTCAGCATGCAATGCCCT
GCCTGTGACGTGGCTGACCTTCTGGAACACTTCTGGAAGAGCAAATGAAT
CCAGACAGCTGGCGTGGATAGCAAAGGCAGCAGGTAGTTTCATGGAAGGG
AAACCCCGCAGTGCAAGTTCTTATGCAAGTCCTCGGCCTTACTAAGGAGC
CTAAGAAGACCAGCCAGAGCCTCCGGGATGGGAAAGTCCCTCTATATAAA
CGCTTCCTGGACAGGCCTCCCTGTCCAGTCCCTGGAGAGTCACACATTGC
ACAACTGTCCCCCTTGGTGGGCTTTATTGTGTACCTACCAGATGTATAAA
AAACCAAGAATATATTCATGACAGGATGCGCTGTGGCAAAACCTATTGAT
CAGATCGGGAAAGGCCTGCGGCTTTCTTTCCCAGATTCTTTGTACTCCAT
TCCCCGATTCTCCCAGACCCTTTTAGCCTAATGATCAATTTACTTGACTG
TTTACCCCCATATCCGAAATTCTCCGGCATTTTATGGACCCCTTCGTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_i13.b1 MSMg01no078_i13.b1 CHROMAT_FILE:
MSMg01no078_i13.b1 PHD_FILE: MSMg01no078_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:53 2005
         (452 letters)



>mm_chr1_155564165_155565016
          Length = 852

 Score =  766 bits (396), Expect = 0.0
 Identities = 414/420 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccatgacttcatcttgaagttcctggtgatagtctcagggcctgatgcacagtaggcat 60
           ||||||||||||||||||  |||||||||||||||||||||||||  |||||||||||||
Sbjct: 420 gccatgacttcatcttgaccttcctggtgatagtctcagggcctggggcacagtaggcat 361

                                                                       
Query: 61  ggaaatgtgtccaatgaatgaaagagtacagaaagctatctcattaattaaatggtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggaaatgtgtccaatgaatgaaagagtacagaaagctatctcattaattaaatggtgaag 301

                                                                       
Query: 121 aatacaccattgagttccattaaatcaaacatcccttaattcattaatttaggagtcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aatacaccattgagttccattaaatcaaacatcccttaattcattaatttaggagtcagt 241

                                                                       
Query: 181 gtgtagaaagatactccccaaagaacttctgaaatgaagttgtcttcgttgcttttccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtgtagaaagatactccccaaagaacttctgaaatgaagttgtcttcgttgcttttccta 181

                                                                       
Query: 241 ttgctatgatataataccctgacaacattaacctaagggaggaagggtttgtttgggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttgctatgatataataccctgacaacattaacctaagggaggaagggtttgtttgggttc 121

                                                                       
Query: 301 atagcccatcctggtggggaagtcaggctagcgagtctttgcgatgcctggtcacactgc 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 120 atagcccatcctggtggggaagtcaggctagcgagtctttgcgatggctggtcacactgc 61

                                                                       
Query: 361 ggaagcagagagcaatggatgcccatgcacatgtagcttcctttgtatgcaatccagagc 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 60  ggaagcagagagcaatggatgcccatgcacatgtagtttcctttgtatgcaatccagagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no078_i13.g1 MSMg01no078_i13.g1 CHROMAT_FILE:
MSMg01no078_i13.g1 PHD_FILE: MSMg01no078_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:53 2005
         (411 letters)



>mm_chr1_155406719_155407529
          Length = 811

 Score =  779 bits (403), Expect = 0.0
 Identities = 409/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattgtgatcttctgtgtgggaacagtctattggcaggtctgcctctgttacgagtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattgtgatcttctgtgtgggaacagtctattggcaggtctgcctctgttacgagtact 260

                                                                       
Query: 61  ttcctggaatatgagtctggctgagtggtgtttgttttcctatcttcagcatgcaatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctggaatatgagtctggctgagtggtgtttgttttcctatcttcagcatgcaatgcc 320

                                                                       
Query: 121 ctgcctgtgacgtggctgaccttctggaacacttctggaagagcaaatgaatccagacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctgtgacgtggctgaccttctggaacacttctggaagagcaaatgaatccagacag 380

                                                                       
Query: 181 ctggcgtggatagcaaaggcagcaggtagtttcatggaagggaaaccccgcagtgcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggcgtggatagcaaaggcagcaggtagtttcatggaagggaaaccccgcagtgcaagt 440

                                                                       
Query: 241 tcttatgcaagtcctcggccttactaaggagcctaagaagaccagccagagcctccggga 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttaagcaagtcctcggccttactaaggagcctaagaagaccagccagagcctccggga 500

                                                                       
Query: 301 tgggaaagtccctctatataaacgcttcctggacaggcctccctgtccagtccctggaga 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tgggaaagtccctctatataaacgcttcctggacaggcttccctgtccagtccctggaga 560

                                                              
Query: 361 gtcacacattgcacaactgtcccccttggtgggctttattgtgtacctacc 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcacacattgcacaactgtcccccttggtgggctttattgtgtacctacc 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)