Query= MSMg01no078_p22.b1 MSMg01no078_p22.b1 CHROMAT_FILE:
MSMg01no078_p22.b1 PHD_FILE: MSMg01no078_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:29 2005
(639 letters)
>mm_chr1_125502422_125503455
Length = 1034
Score = 1174 bits (607), Expect = 0.0
Identities = 627/637 (98%), Gaps = 7/637 (1%)
Strand = Plus / Minus
Query: 4 ggaattctttgctctacctctcaggatggccatattgaataaatctccctataccacttt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ggaattctttgctctacttctcaggatggccatattgaataaatctccctataccacttt 775
Query: 64 ccccttttattgtctccccaattgcaattttggggaagggtgtctggtccctgtagcttt 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ccccttttattgtctcctcaattgcaattttggggaagggtgtctggtccctgtagcttt 715
Query: 124 cagagcccagggtctcacaactgcactagcaagctaatagttagcaaatacagagcactt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cagagcccagggtctcacaactgcactagcaagctaatagttagcaaatacagagcactt 655
Query: 184 tagtactgaaacaataaagaactgagcctgagcgctgcccatgagatagaatgaccctac 243
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 654 tagtactgaaacaataaagaa------ctgagcgctgcccatgagatagaatgaccctac 601
Query: 244 tggggaaactgggcttctctcttagaggtcttattgataaaagaatttaagaacaagttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tggggaaactgggcttctctcttagaggtcttattgataaaagaatttaagaacaagttc 541
Query: 304 agaaggaagctcaaggaaatgttattttgtccattaaaaggaaagctctggggcaataag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agaaggaagctcaaggaaatgttattttgtccattaaaaggaaagctctggggcaataag 481
Query: 364 ctttatatcttggcagctgcccagaggagaacgtaggtaagggaagagaacaagccatgg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctttatatcttggcagctgcccagaggagaacgtaggtaagggaagagaacaagccatgg 421
Query: 424 cttttgagttaaacagaagttatccatgtgacagacaagcacttacacaatgagtagagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cttttgagttaaacagaagttatccatgtgacagacaagcacttacacaatgagtagagg 361
Query: 484 agtttagaggaagaatcaaatctgaacatgtcagtgaaaatgtgcttagaatagcaacag 543
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agtttagaggaagaatcaaatatgaacatgtcagtgaaaatgtgcttagaatagcaacag 301
Query: 544 aagggataacaaaaactagtattttccaattaattcaaaacagtggttgtatttac-aaa 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 300 aagggataacaaaaactagtattttccaattaattcaaaacagtggttgtatttacaaaa 241
Query: 603 aaatgcaagagtatggctctggaagaaactgaagagg 639
|||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaatgcaagagtatggctctggaagaaactgaagagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1034
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1024
Effective search space: 644096
Effective search space used: 644096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_p22.g1 MSMg01no078_p22.g1 CHROMAT_FILE:
MSMg01no078_p22.g1 PHD_FILE: MSMg01no078_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:29 2005
(566 letters)
>mm_chr1_125339833_125340799
Length = 967
Score = 990 bits (512), Expect = 0.0
Identities = 553/567 (97%), Gaps = 1/567 (0%)
Strand = Plus / Plus
Query: 1 accatttcttcaa-ttcaaattactgagaaaacaattaaaactattaatatataacatag 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accatttcttcaaattcaaattactgagaaaacaattaaaactattaatatataacatag 260
Query: 60 aattactactggttatttttataaatgtgaaagtataaactatttttatatgtataattg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattactactggttatttttataaatgtgaaagtataaactatttttatatgtataattg 320
Query: 120 gaacatttagtttctttgtacgcaatgtgcactttggaaaattgtgttccctttattctc 179
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gaacatttagtttctttatacacaatatgcactttggaaaattgtgttccctttattctc 380
Query: 180 atattgtggttgctatgtacaacatttagcagcaatattggtctagattatttaagactc 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattatggttgctatgtacaacatttagcagcaatattggtctagattatttaagactc 440
Query: 240 ttgcatttgtacagaggtaacacaatgaattaaatatgaaagatattacctacataagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcatttgtacagaggtaacacaatgaattaaatatgaaagatattacctacataagtt 500
Query: 300 tgattacagaaaataataccgtattctctaagtggaaatgataaaattaagagtagaata 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgattacagaaaataataccatattctctaagtggaaatgataaaattaagagtagaata 560
Query: 360 tttatatttgtaaatttgagaggtgaaattgattttatcaattattcctactttataatt 419
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttatatttataaatttaagaggtgaaattgattttatcaattattcctactttataatt 620
Query: 420 tgcaatcaagtatactgacccaatttanatattgacatagtttgccatgccaggttaaag 479
||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||
Sbjct: 621 tgcaatcaagtatactgactcaatttaaatattgacatagttttccatgccaggttgaag 680
Query: 480 agtaagtaagcctaggtgttaaagacaggcctacttgctcattcttataacacaactagc 539
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 681 agtaagtaagcctaggtgttaaagacaggcctacttactcattcttataacacagctagc 740
Query: 540 taatgattactccatggtcaaaactgg 566
|||||||||||||||||||||||||||
Sbjct: 741 taatgattactccatggtcaaaactgg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
