CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAGAGGATCCGCG
GAATTCCATATTCCATTAAAGTGGAACCTGTAATATACTCAAAGGACTTG
TAGGTGTAAAAAAATAAGAATAAATAAATAAATGTGATGAATGTATAAAA
GAAAAACAATGAGTATGAAATGATATATTATAAAACAAATATAGAAAATA
AGATAAAACTTAAAAAATAATAAAAATTAAAATAAAAAATCTAAATAAGA
AGAAACGTGCACAATATTATATGCCAAAGAACTGCCAAAGATATCACTAA
GTTAATTTTTTGATGTGCATTTATTTCTGCGCACAAAGTTAATAGTTTAT
GTCCTTCGTGATACTTCTTGAATAAGCTTAATAATTACTATAAATCCAGG
AATTATTTTAGGATCATCATTAAGGATAAAGAAATCATCTACTTGTCTAT
ATAGCATCACTACAAGACAGTAAATCTTTGTAGTTCTGCAGAGATCTCCT
CAAATGGGTACACTAACACCTAGAGATGTTTATATATGTTTATAATAACA
GGAAAATCATATTAATAGTAGGAATCCTTCCTTAAATGATTTTCTCCTCT
ACCTTACTTATGAGAGCAAATCAGTCATGGATATTTTCTTAATCCAAAGC
AGACTCATCTCAAGAAAATCACCTGCTAGTTCTTAGCTTGTTGGCT

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTCCAGTTTTCTAACTTACTCC
TTTATTCTGTGTGTTTTATTGGGGAAATTGAGAACCTCATTATTTAGAGT
TATCAATGAGCAGTGTTTATTGATTCCTGTTAATTTATTATGGGTTTTTC
TCCTCTCTTTTTATTTACTGGTCTTAAACTATTATTCCTTAAATCTTCTT
AGATGGGGCTAAACATTTCAGGCTGAAGGTTTTCTTCTTATGCTGTCCTT
TTGAACTCCATTAGCAGATATAAGCAACTCAAATTTTGCTTAATCATTGT
ATATTTTACTGTCTGAATTGTAATTGAATACCCAGAATAATATTTCCAGG
TATAGTAATTTCAGGTAGTTTCAGTTGTGTCTCAGAATTTGCAAAGCATC
TATTTAAGACATTCTGATTTTCAGAATCTGCATTGAGAAGTCAAGTGTTA
TTTTAATAAGCCGGGCATTACTTGACTTGGACTTTTTCGCTTGCAGTTTT
AATATTCTTTCTTTGTTCTGCACATTTACTATCCAGATTTTAGTATGTTG
TGGAAAACAACTTTTTTTGCTCTTGTCTGTATGGTGTGCTGAATGCTTCA
TAGGTACCTCCTTATTTAGGCTGAAGACATTTTCTTCTTA

Query= MSMg01no079_g05.b1 MSMg01no079_g05.b1 CHROMAT_FILE:
MSMg01no079_g05.b1 PHD_FILE: MSMg01no079_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:00 2005
         (621 letters)



>mm_chr1_110373176_110374196
          Length = 1021

 Score = 1133 bits (586), Expect = 0.0
 Identities = 613/622 (98%), Gaps = 1/622 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtggaacctgtaatatactcaaaggacttgtaggtgtaaaaaaataagaataaataaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aagtggaacctataatatactcaaaggacttgtaggtgtaaaaaaataagaataaataaa 259

                                                                       
Query: 61  taaatgtgatgaatgtataaaagaaaaacaatgagtatgaaatgatatattataaaacaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaatgtgatgaatgtataagagaaaaacaatgagtatgaaatgatatattataaaacaa 319

                                                                       
Query: 121 atatagaaaataagataaaacttaaaaaataataaaaattaaaa-taaaaaatctaaata 179
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 atatagaaaataagataaaacttaaaaaataataaaaattaaaattaaaaaatctaaata 379

                                                                       
Query: 180 agaagaaacgtgcacaatattatatgccaaagaactgccaaagatatcactaagttaatt 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaaaaacgtgcacaatattatatgccaaagaactgccaaagatatcactaagttaatt 439

                                                                       
Query: 240 ttttgatgtgcatttatttctgcgcacaaagttaatagtttatgtccttcgtgatacttc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttgatgtgcatttatttctgcgcacaaagttaatagtttatgtccttcgtgatacttc 499

                                                                       
Query: 300 ttgaataagcttaataattactataaatccaggaattattttaggatcatcattaaggat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgaataagcttaataattactataaatccaggaattattttaggatcatcattaaggat 559

                                                                       
Query: 360 aaagaaatcatctacttgtctatatagcatcactacaagacagtaaatctttgtagttct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaagaaatcatctacttgtctatatagcatcactacaagacagtaaatctttgtagttct 619

                                                                       
Query: 420 gcagagatctcctcaaatgggtacactaacacctagagatgtttatatatgtttataata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcagagatctcctcaaatgggtacactaacacctagagatgtttatatatgtttataata 679

                                                                       
Query: 480 acaggaaaatcatattaatagtaggaatccttccttaaatgattttctcctctaccttac 539
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 acaggaaaaccatattaatagtaggaatccttccttaaatgattttctcctgtaccttac 739

                                                                       
Query: 540 ttatgagagcaaatcagtcatggatattttcttaatccaaagcagactcatctcaagaaa 599
           |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct: 740 ttatgagagcaaatcagtcatggacaatttcttaatccaaagtagactcatctcaagaaa 799

                                 
Query: 600 atcacctgctagttcttagctt 621
           ||||||||||||||||||||||
Sbjct: 800 atcacctgctagttcttagctt 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)