BAC Information

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BAC

Clone NameMSMg01-079G09
Chromosome1 (Build37)
Map Location 193,204,018 - 193,348,028
singlet/doubletdoublet
Overlap genePpp2r5a, LOC100039501, LOC667044
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik
Downstream geneDtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079G09.T7 (MSMg01no079_g09.b1)MSMg01-079G09.TJ (MSMg01no079_g09.g1)
ACCAG300487AG300488
length704709
length of high quality
(start - end)
604 (36 - 639)554 (69 - 622)
definitionCHROMAT_FILE: MSMg01no079_g09.b1 PHD_FILE: MSMg01no079_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:01 2005CHROMAT_FILE: MSMg01no079_g09.g1 PHD_FILE: MSMg01no079_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,347,621 - 193,348,028)(193,204,018 - 193,204,571)
sequence
AATTTGCGGCGCTAAACGACTCCTATCGAAGAGGACCGCGGAATTCAATT
CCCACCACCACATGGCCACGTGATGGCTCACAACCATCTGTAATAGGATC
CAATGCCCTCCTCTGGTGTGTCTGAGGAAACCACAATGCACTCACATACA
TAGAAAAATACAATAAAATTTTTAAAAATGAGAAATTAATTGGTGGTTGT
CAGGGACTATAGAGTAAAGGAGGACAAGCCAACAACGGGACTGTGTGGCA
TTGAAACTACTGAGTACCTTTGGTGGGTATACACACACACACACACACAC
TCATGATAAAACAGAGGTGACCTGAGCAGCTAGAATACTGTATCAAGTAC
ACACATCCTCATTGCCATATACCCTAGTTGCAAAAGGCATTGCTACAGAA
GGAAAGTGGGTAAACTGCACACGGAATCTCTGCACAATGTCACACAAGGC
ATAACTGTCTAATTGTCAACGGGCTGCATAGTCAGAGCCCCTGTGAAATG
AAACTGGAGCTGAAACTCCCCTATTGCCTGGTGTTCTTGTGGGTTTCCAG
TGTTCAGATATGTACATATTATTTCTTACAGTCTCTAGTGTAGCACAAGC
GTGTAGCCGGGGAGCAATCCTTCCACCTGCGTTGACCTCACCATCAAGGT
TTGTAACAGCGAAAGCACAGTGTGATATTTACGCGACAACTCTACCCACC
AAGT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATTAAAAAAACCAGAGGCTCTCTCTACTTCA
ATCTTCCTGACAGCCTTCCTCAGGTACTAACAGACACTGGTACTTCTATC
ACCAAGTTAGGTAGAGAGGTGAGAGTTCCCTTCTTACTCTACTCATACCA
CAGAGACTGTACTTTTGGGCAGCACCACTAAGAATATGACCCCAATCACC
CTACCCCTGGCATTGTATGCAAGATAAAAAGACCTTAGGCTACTACCTAC
AGGTTACCCTTGCATAAAGCTAGCTCTTCTTTCCCAAAGAAATCTTTAGT
TTACAAGTACTCTCAGAAACAGCAGGGGCTATGATGGAAGGGGATGATAG
AGAATTCTAGATTCACCAAGAACTCATAAGCCAACTTACTGTCAGAAGAG
ACCTGTAAAAGGGAAGAGCTTTTAGTATGTAGAGGAGTCTTTTGGTATGA
GAGTCATGTCCACCCCCTTCCTACTTCCATCCCTACCCCTCTGTCTGGCA
TAGTACAGCCCATGGGTTAACAAGAAGGGGGAAAAGGGCACAGCATACTT
AATTGCTTCTGAGAGTTCACACTAGACCTAACAGATTATGATTACCAAGA
CACCATTACTCAAAGGGAGCCCTGATTAAAGAAAGATGTCATGACAATGT
CTCGTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_g09.b1 MSMg01no079_g09.b1 CHROMAT_FILE:
MSMg01no079_g09.b1 PHD_FILE: MSMg01no079_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:01 2005
         (604 letters)



>mm_chr1_193347025_193348028
          Length = 1004

 Score =  789 bits (408), Expect = 0.0
 Identities = 408/408 (100%)
 Strand = Plus / Minus

                                                                        
Query: 197  acaacgggactgtgtggcattgaaactactgagtacctttggtgggtatacacacacaca 256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 acaacgggactgtgtggcattgaaactactgagtacctttggtgggtatacacacacaca 945

                                                                        
Query: 257  cacacacactcatgataaaacagaggtgacctgagcagctagaatactgtatcaagtaca 316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  cacacacactcatgataaaacagaggtgacctgagcagctagaatactgtatcaagtaca 885

                                                                        
Query: 317  cacatcctcattgccatataccctagttgcaaaaggcattgctacagaaggaaagtgggt 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  cacatcctcattgccatataccctagttgcaaaaggcattgctacagaaggaaagtgggt 825

                                                                        
Query: 377  aaactgcacacggaatctctgcacaatgtcacacaaggcataactgtctaattgtcaacg 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  aaactgcacacggaatctctgcacaatgtcacacaaggcataactgtctaattgtcaacg 765

                                                                        
Query: 437  ggctgcatagtcagagcccctgtgaaatgaaactggagctgaaactcccctattgcctgg 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  ggctgcatagtcagagcccctgtgaaatgaaactggagctgaaactcccctattgcctgg 705

                                                                        
Query: 497  tgttcttgtgggtttccagtgttcagatatgtacatattatttcttacagtctctagtgt 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  tgttcttgtgggtttccagtgttcagatatgtacatattatttcttacagtctctagtgt 645

                                                            
Query: 557  agcacaagcgtgtagccggggagcaatccttccacctgcgttgacctc 604
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644  agcacaagcgtgtagccggggagcaatccttccacctgcgttgacctc 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no079_g09.g1 MSMg01no079_g09.g1 CHROMAT_FILE:
MSMg01no079_g09.g1 PHD_FILE: MSMg01no079_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:01 2005
         (554 letters)



>mm_chr1_193203818_193204771
          Length = 954

 Score = 1040 bits (538), Expect = 0.0
 Identities = 550/554 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattaaaaaaaccagaggctctctctacttcaatcttcctgacagccttcctcaggtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattaaaaaaaccagaggctctctctacttcaatcttcctgacagccttcctcaggtact 260

                                                                       
Query: 61  aacagacactggtacttctatcaccaagttaggtagagaggtgagagttcccttcttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagacactggtacttctatcaccaagttaggtagagaggtgagagttcccttcttact 320

                                                                       
Query: 121 ctactcataccacagagactgtacttttgggcagcaccactaagaatatgaccccaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctactcataccacagagactgtacttttgggcagcaccactaagaatatgaccccaatca 380

                                                                       
Query: 181 ccctacccctggcattgtatgcaagataaaaagaccttaggctactacctacaggttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctacccctggcattgtatgcaagataaaaagaccttaggctactacctacaggttacc 440

                                                                       
Query: 241 cttgcataaagctagctcttctttcccaaagaaatctttagtttacaagtactctcagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgcataaagctagctcttctttcccaaagaaatctttagtttacaagtactctcagaa 500

                                                                       
Query: 301 acagcaggggctatgatggaaggggatgatagagaattctagattcaccaagaactcata 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 acagcaggggctatgatggaagggaatgatagagaattctagattcaccaagaactcata 560

                                                                       
Query: 361 agccaacttactgtcagaagagacctgtaaaagggaagagcttttagtatgtagaggagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaacttactgtcagaagagacctgtaaaagggaagagcttttagtatgtagaggagt 620

                                                                       
Query: 421 cttttggtatgagagtcatgtccacccccttcctacttccatccctacccctctgtctgg 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 cttttggtatgagagtcatgtccacacccttcctacttccatccctacccctctgtctgg 680

                                                                       
Query: 481 catagtacagcccatgggttaacaagaagggggaaaagggcacagcatacttaattgctt 540
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaagtacagcccatgggttaacaagaagggggaaaagggcacagcatacttaattgctt 740

                         
Query: 541 ctgagagttcacac 554
           ||||||||||||||
Sbjct: 741 ctgagagttcacac 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)