Query= MSMg01no079_i24.b1 MSMg01no079_i24.b1 CHROMAT_FILE:
MSMg01no079_i24.b1 PHD_FILE: MSMg01no079_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:13 2005
(537 letters)
>mm_chr1_87465547_87466483
Length = 937
Score = 864 bits (447), Expect = 0.0
Identities = 510/533 (95%), Gaps = 5/533 (0%)
Strand = Plus / Plus
Query: 8 ttctatggtatcacaa---aaaatcataaattaaggcaattttctaatacattggtggga 64
|||||||||| | || |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 207 ttctatggta--agaaaataaaatcataaatgaaggcaattttctaatacattggtggga 264
Query: 65 atgctggataggtggctacagtaaagtggggggacccctctatctgatgataatcttacc 124
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgctggataggtggctatagcaaagtggggggacccctctatctgatgataatcttacc 324
Query: 125 ctttgggttggtggaagctaggggactattagtatattctaaaagggttttaatcttata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttgggttggtggaagctaggggactattagtatattctaaaagggttttaatcttata 384
Query: 185 gtcatgggctactaggtcaaccacagaggtaggtgatgcgtggctctgaagagggcataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcatgggctactaggtcaaccacagaggtaggtgatgcgtggctctgaagagggcataa 444
Query: 245 aatagtctaagataagttttccctagatttgaatcattccagctcttcattcccatgaag 304
||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||
Sbjct: 445 aatagtctaagataagttttccctagacttgaaactttccagatcttcattcccatgaag 504
Query: 305 attctaccagtcagtcaccattatagaatccttatcacaggtgctgctttaacttcaggt 364
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 505 attctaccagtcagtcaccattatagaatccttaacacaggtgcagctttaacttcaggt 564
Query: 365 cacaggaccttacagtttgtagtttaatattacttcctgatccaccgagatgtaaactag 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 565 cacaggaccttacagtttgtagtttaatattactttctgatccaccgagatgtaaacaag 624
Query: 425 tattttcagtgatgagctgcccctgggccatgcccaccctgccgagatgcactctaccct 484
||||| ||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 625 tatttacagtgatgagctgcccctgggccatgcgcaccctgccgtgatgcactgtaccct 684
Query: 485 caaatcaagaggcaaagaaaatgtgtgtcctttacattgcttcttgtcaggtg 537
|||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 caaaccaagaggcaaagcaaatgtgtgtcctttacattgcttcttgtcaggtg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_i24.g1 MSMg01no079_i24.g1 CHROMAT_FILE:
MSMg01no079_i24.g1 PHD_FILE: MSMg01no079_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:13 2005
(489 letters)
>mm_chr1_84900563_84901451
Length = 889
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%), Gaps = 1/490 (0%)
Strand = Plus / Plus
Query: 1 actatgtggagcaggctggcctcgacctc-cagagatctgcctgcctctgcctcctgagt 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 200 actatgtggagcaggctggcctcgacctcacagagatctgcctgcctctgcctcctgagt 259
Query: 60 gctgggattaaaaaagtatgcaccaccatgtctggctgatgttacctctgttaaaacatc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctgggattaaaaaagtatgcaccaccatgtctggctgatgttacctctgttaaaacatc 319
Query: 120 aagttgtgctacagatatgatgatactaagcaggtctttggccaggggtggagacagagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagttgtgctacagatatgatgatactaagcaggtctttggccaggggtggagacagagg 379
Query: 180 cagggaggcagaggaaggcaggtcctgtcatttcaaggtcagcctggtcaacatagtgag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagggaggcagaggaaggcaggtcctgtcatttcaaggtcagcctggtcaacatagtgag 439
Query: 240 accctgtctcaaaacaaaacaaaacccaaacatgtctttgtgctaggccagatgaaatat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 accctgtctcaaaacaaaacaaaacccaaacatgtctttgtgctaggccagatgaaatat 499
Query: 300 ggcctacacaaattattaaatacaagttattacctagctaacctccaggcaatgcacaag 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 ggcctacacaaattattaaatacaagttattacctagctaacttccaggcaatgcacaag 559
Query: 360 tcattggaggtaatatcaagtgtgtgcattagtgggacctttgggactccttttcaatta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcattggaggtaatatcaagtgtgtgcattagtgggacctttgggactccttttcaatta 619
Query: 420 gccagcttgcttcctattggtgttatctgggcagtttcatggagcaatcttttcaatagc 479
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 620 gccagcttgcttcctattggtgttatctgggcagtttcatggagcaacctttccaatagt 679
Query: 480 ccttaagggt 489
||||||||||
Sbjct: 680 ccttaagggt 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
