Query= MSMg01no079_n06.b1 MSMg01no079_n06.b1 CHROMAT_FILE:
MSMg01no079_n06.b1 PHD_FILE: MSMg01no079_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:33 2005
(630 letters)
>mm_chr1_138496501_138497530
Length = 1030
Score = 1158 bits (599), Expect = 0.0
Identities = 620/627 (98%), Gaps = 2/627 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgttttg-taccagtttcagcaaatttccccggttgccattttatcaagataa 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattcatgttttgaaagcagtttcagcaaatttccccggttgccattttatcaagataa 771
Query: 64 ctctctcagtcatcttttctgccaacaaatattctcaaccaaactggctaccccaaacct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctctctcagtcatcttttctgccaacaaatattctcaaccaaactggctaccccaaacct 711
Query: 124 tgtatatcgtaagaaattcattcccttgggtctagctgaatagcagatctcagaatacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgtatatcgtaagaaattcattcccttgggtctagctgaatagcagatctcagaatacag 651
Query: 184 aacactaagaaaaaaatgcttagttttcagaacctctgtagtaaaaatttccctggacct 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 650 aacactaagaaaaaaatgcttagttttcagaacctctgtagtaaaaaattccctggacct 591
Query: 244 cccaagagaaataataaaaagattatgtaatatgattaaatgctaactcacaataaaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cccaagagaaataataaaaagattatgtaatatgattaaatgctaactcacaataaaata 531
Query: 304 aagccctatgggatgttctgggcatgggggtgcagtgcagggattagtggcttgcacagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aagccctatgggatgttctgggcatgggggtgcagtgcagggattagtggcttgcacagt 471
Query: 364 cacaatacccggctttcaaagactcactctactgaaaagttgctcgagagaggtgaagtt 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 470 cacaatacccggctttcaaagactcactctactgaaaagttgctcgaaagaggtgaagtt 411
Query: 424 gaggaccatcaagcccagagaatgacctcaaccagataaggaggttgggatctatttgca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaggaccatcaagcccagagaatgacctcaaccagataaggaggttgggatctatttgca 351
Query: 484 tgctgcaaaaaaaaccaggaaggaaattgccaaaatagtaccagggactttccctccttc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgctgcaaaaaaaaccaggaaggaaattgccaaaatagtaccagggactttccctccttc 291
Query: 544 catcattttctctgattttttcagtgcctttttcttcaccccactttctcgttagtatgg 603
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 290 catcattttctctga-tttttcagtgtctttttcttcaccccactttctcgttagtatgg 232
Query: 604 ggtcttgattatttgcccaggctaacc 630
|||||||||||||||||||||||||||
Sbjct: 231 ggtcttgattatttgcccaggctaacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_n06.g1 MSMg01no079_n06.g1 CHROMAT_FILE:
MSMg01no079_n06.g1 PHD_FILE: MSMg01no079_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:33 2005
(520 letters)
>mm_chr1_138326093_138327012
Length = 920
Score = 934 bits (483), Expect = 0.0
Identities = 510/519 (98%)
Strand = Plus / Plus
Query: 1 ttcctgagcagcagcaggaagtggagttgggtagccagggtggggtcaaattatagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctgagcagcagcaggaagtggagttgggtagccagggtggggtcaaattatagaggc 260
Query: 61 cctgaagggaggcaggagcttgtggatctgatgtgggagacagtgaggccttctaaatta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgacgggaggcaggagcttgtggatctgatgtgggagacagtgaggccttctaaatta 320
Query: 121 ctcgttgggcatagcatggtaaaagtggtgttttagggaggcaatctccctgctctcggt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctcgttgggcatagcatggtaaaagtggtgttttagggaggcgatctccctgctctcggt 380
Query: 181 acatgagatttaaagaggaaggacccagagaccaggcatccagcaaaccagccaaggagt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 acatgagatttaaagaggaaggacccagagaccaggcatccagcgaaccagccaaggagt 440
Query: 241 gagggggtcaaaggcagggtggaggccccgggactgaagggttaaatctgagagtccctg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggggtcaagggcagggtggaggccccgggactgaagggttaaatctgagagtccctg 500
Query: 301 taaagtaatcatttatgaggcttctgatgacatatggcatatggggaaagaaggcagctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagtaatcatttatgaggcttctgatgacatatggcatatggggaaagaaggcagctg 560
Query: 361 gagaggcgactccagaaattatagttgtgcctttaattttagaaagggtaaccgagtaaa 420
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaggtgactccagaaattatagctgtgcctttaattttagaaagggtaaccgagtaaa 620
Query: 421 tgtgggtcctggtaatattgtctgagcttggccttgctgtgaacagcaaacgaaggggaa 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 621 tgtgggtcctggtaatattgtctgagcttggccttgctgtgaacagcagacgacggggaa 680
Query: 481 tgcttttctcctgcacaaggagtgcactggagtctgtga 519
||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 tgcttttctcctgcacagggagtgcactggagtctgtga 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
