Query= MSMg01no079_n12.b1 MSMg01no079_n12.b1 CHROMAT_FILE:
MSMg01no079_n12.b1 PHD_FILE: MSMg01no079_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:35 2005
(493 letters)
>mm_chr1_138496637_138497530
Length = 894
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%), Gaps = 1/490 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgttttgtcag-agtttcagcaaatttccccggttgccattttatcaagataa 63
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gaattcatgttttgaaagcagtttcagcaaatttccccggttgccattttatcaagataa 635
Query: 64 ctctctcagtcatcttttctgccaacaaatattctcaaccaaactggctaccccaaacct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ctctctcagtcatcttttctgccaacaaatattctcaaccaaactggctaccccaaacct 575
Query: 124 tgtatatcgtaagaaattcattcccttgggtctagctgaatagcagatctcagaatacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgtatatcgtaagaaattcattcccttgggtctagctgaatagcagatctcagaatacag 515
Query: 184 aacactaagaaaaaaatgcttagttttcagaacctctgtagtaaaaatttccctggacct 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 514 aacactaagaaaaaaatgcttagttttcagaacctctgtagtaaaaaattccctggacct 455
Query: 244 cccaagagaaataataaaaagattatgtaatatgattaaatgctaactcacaataaaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cccaagagaaataataaaaagattatgtaatatgattaaatgctaactcacaataaaata 395
Query: 304 aagccctatgggatgttctgggcatgggggtgcagtgcagggattagtggcttgcacagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aagccctatgggatgttctgggcatgggggtgcagtgcagggattagtggcttgcacagt 335
Query: 364 cacaatacccggctttcaaagactcactctactgaaaagttgctcgagagaggtgaagtt 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 334 cacaatacccggctttcaaagactcactctactgaaaagttgctcgaaagaggtgaagtt 275
Query: 424 gaggaccatcaagcccagagaatgacctcaaccagataaggaggttgggatctatttgca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaggaccatcaagcccagagaatgacctcaaccagataaggaggttgggatctatttgca 215
Query: 484 tgctgcaaaa 493
||||||||||
Sbjct: 214 tgctgcaaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_n12.g1 MSMg01no079_n12.g1 CHROMAT_FILE:
MSMg01no079_n12.g1 PHD_FILE: MSMg01no079_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:35 2005
(430 letters)
>mm_chr1_138326093_138326922
Length = 830
Score = 777 bits (402), Expect = 0.0
Identities = 423/430 (98%)
Strand = Plus / Plus
Query: 1 ttcctgagcagcagcaggaagtggagttgggtagccagggtggggtcaaattatagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctgagcagcagcaggaagtggagttgggtagccagggtggggtcaaattatagaggc 260
Query: 61 cctgaagggaggcaggagcttgtggatctgatgtgggagacagtgaggccttctaaatta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgacgggaggcaggagcttgtggatctgatgtgggagacagtgaggccttctaaatta 320
Query: 121 ctcgttgggcatagcatggtaaaagtggtgttttagggaggcaatctccctgctctcggt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctcgttgggcatagcatggtaaaagtggtgttttagggaggcgatctccctgctctcggt 380
Query: 181 acatgagatttaaagaggaaggacccagagaccaggcatccagcaaaccagccaaggagt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 acatgagatttaaagaggaaggacccagagaccaggcatccagcgaaccagccaaggagt 440
Query: 241 gagggggtcaaaggcagggtggaggccccgggactgaagggttaaatctgagagtccctg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggggtcaagggcagggtggaggccccgggactgaagggttaaatctgagagtccctg 500
Query: 301 taaagtaatcatttatgaggcttctgatgacatatggcatatggcgaaagaaggcagctg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 taaagtaatcatttatgaggcttctgatgacatatggcatatggggaaagaaggcagctg 560
Query: 361 gagaggcgactccagaaattatagttgtgcctttaattttagaaagggtaaccgagtaaa 420
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaggtgactccagaaattatagctgtgcctttaattttagaaagggtaaccgagtaaa 620
Query: 421 tgtgggtcct 430
||||||||||
Sbjct: 621 tgtgggtcct 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
