BAC Information

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BAC

Clone NameMSMg01-079N23
Chromosome1 (Build37)
Map Location 89,063,380 - 89,063,945
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1
Downstream gene1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079N23.T7 (MSMg01no079_n23.b1)MSMg01-079N23.TJ (MSMg01no079_n23.g1)
ACCAG300850AG300851
length727724
length of high quality
(start - end)
575 (37 - 611)338 (66 - 403)
definitionCHROMAT_FILE: MSMg01no079_n23.b1 PHD_FILE: MSMg01no079_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:37 2005CHROMAT_FILE: MSMg01no079_n23.g1 PHD_FILE: MSMg01no079_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGT
CTTGTCTCCAGTACTGTGGAGGCCAGACAGCCCCAAGTCCCACATCTTGT
GAGCCATGACCAGCTCTAGGAGGCACCAATCACTAGTGGTGGCCACACTG
AGGATGAACACCATGTCTAGTTGGGATTGTCGTAATTAACGGGGTGGGCC
TGAGATTCCTAAGTTTGGGAGGCTGGAAGTATATATGGGTCAGGGATCTG
GCATGGTCAGGTTCTGGTGAGGACCCATTCCTGTTTGTGGATGGCAGTCT
TCCTGCTCCATCCCCACATGGAAGAGAGCAGAGAAGTAAGGCAAGCCCAT
TCATGTCCCATCGTTTAGGGATCCTCTCTCCTATCTGGTCACTCTCCAGT
AAGATCATCAGTGCTGTGGTTTCAGCCTATCACGTGGGAGGGAGCGCTGT
CAGCCAGTCCATAATAGACAGTGAGGTCAGAGGGTACGCAACAGCCCAGT
CAGGCAATAACCAAAGATACAGGATAGATAACGCAAATGTACCCTGAGCT
GTTTCCCCAGGTCTTCTCCTAGCCCTGTCCTTCCCGGGGGGAGGCACTTT
CTAGACATAGTACCTACAGTGGACCATTGCCTGGGCTCCATTAGTGGTTC
TTCTCTGCCTTCCCTGGTGGTACCCTCTTCCAATCTCAGCAAATTAAGGG
TGCTTCTTTCTCCCCACCTGCCTGTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGACTTGGTGTTGGGAGACAGGCGTTGTTGGAC
TATTACAGGGACACAGCCTGTAAGCCATTGCAATAAACCCTTTTTAACTA
TATGAACTTATACATGTATACATTATATTTATATAATATATTATATATTT
AAGTATATTTATATATAATATTTAAATTAAATATGTGCTTGCATTTTATT
TCTTCTGTTTGTCTAGGTAACTCTGACTAATACACTCCCTAAACCATCCC
ACCAACTAGATACCATGTATTAAAATATATGAGCCTTTAGGGGCCATCCT
CATTCAAACTCCACACATGATTAATTTAAAATATCTGTTTTAGGGCTGGA
GAGATGGCTCACCAGTTGAGAGCACTGACTGCTCTGCTGAAGGTCTTGAG
TTCAAATCCACGCAACCACATGGTGTCTCACAACCATCTGTAATGAGATC
TGCCACCCTCTTCTGGGGTGCCTGATAACAGCTACAGCGTACTTGTATAT
AATAAATAACTAACCCTAAACAAACATATCTGCTTTAAGCCACTTTGGTT
ATAACAGCCCTAGTAAGCTAATGCCATCATTATAAGGCTGAAAAAGACAG
GCTCACAGGTAATGTGAGTTGACGTTCTGAACGTTTGTAACCCCAGGTAC
TTGTCTGTACTCATCATGCAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_n23.b1 MSMg01no079_n23.b1 CHROMAT_FILE:
MSMg01no079_n23.b1 PHD_FILE: MSMg01no079_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:37 2005
         (575 letters)



>mm_chr1_89063176_89064149
          Length = 974

 Score =  998 bits (516), Expect = 0.0
 Identities = 555/568 (97%), Gaps = 3/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtcttgtctccagtactgtggaggccagacagccccaagtcccacatcttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtcttgtctccagtactgtggaggccagacagccccaagtcccacatcttgt 264

                                                                       
Query: 65  gagccatgaccagctctaggaggcaccaatcactagtggtggccacactgaggatgaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 gagccatgaccagctctaggaggcaccaatcactagtggtggccatactgaggatgaaca 324

                                                                       
Query: 125 ccatgtctagttgggattgtcgtaattaacggggtgggcctgagattcct-aagtttggg 183
           ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct: 325 ccatgtctagttgggattgtcgtaactaacggggtgggcctgagattc-tcaagtttggg 383

                                                                       
Query: 184 aggctggaagtatatatgggtcagggatctggcatggtcaggttctggtgaggacccatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggctggaagtatatatgggtcagggatctggcatggtcaggttctggtgaggacccatt 443

                                                                       
Query: 244 cctgtttgtggatggcagtcttcctgctccatccccacatggaagagagcagagaagtaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgtttgtggatggcagtcttcctgctccatccccacatggaagagagcagagaagtaa 503

                                                                       
Query: 304 ggcaagcccattcatgtcccatcgtttagggatcctctctcctatctggtcactctccag 363
           |||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct: 504 ggcaagcccattcatgtcccatcgtt-agggatcctctctcatatctgatcactctccag 562

                                                                       
Query: 364 taagatcatcagtgctgtggtttcagcctatcacgtgggagggagcgctgtcagccagtc 423
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 563 taagatcatcagtgctgtggtttcagcctatcaagtgggagggagcgctgtcagtcagtc 622

                                                                       
Query: 424 cataatagacagtgaggtcagagggtacgcaacagcccagtcaggcaataaccaaagata 483
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 623 cataatagacagtgaggtcagagggtatgcaacagcccagtcaggcaataaccaaagata 682

                                                                       
Query: 484 caggatagataacgcaaatgtaccctgagctgtttccccaggtcttctcctagccctgtc 543
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caggatagataacgcaaatgcaccctgagctgtttccccaggtcttctcctagccctgtc 742

                                       
Query: 544 cttcccggggggaggcactttctagaca 571
           ||||| ||| ||||||||||||||||||
Sbjct: 743 cttcctgggaggaggcactttctagaca 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space:   544660
Effective search space used:   544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)