BAC Information

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BAC

Clone NameMSMg01-079O24
Chromosome1 (Build37)
Map Location 89,063,380 - 89,063,819
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1
Downstream gene1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079O24.T7 (MSMg01no079_o24.b1)MSMg01-079O24.TJ (MSMg01no079_o24.g1)
ACCAG300900AG300901
length714710
length of high quality
(start - end)
445 (39 - 483)341 (68 - 408)
definitionCHROMAT_FILE: MSMg01no079_o24.b1 PHD_FILE: MSMg01no079_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:41 2005CHROMAT_FILE: MSMg01no079_o24.g1 PHD_FILE: MSMg01no079_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GTCTTGTCTCCAGTACTGTGGAGGCCAGACAGCCCCAAGTCCCACATCTT
GTGAGCCATGACCAGCTCTAGGAGGCACCAATCACTAGTGGTGGCCACAC
TGAGGATGAACACCATGTCTAGTTGGGATTGTCGTAATTAACGGGGTGGG
CCTGAGATTCCTAAGTTTGGGAGGCTGGAAGTATATATGGGTCAGGGATC
TGGCATGGTCAGGTTCTGGTGAGGACCCATTCCTGTTTGTGGATGGCAGT
CTTCCTGCTCCATCCCCACATGGAAGAGAGCAGAGAAGTAAGGCAAGCCC
ATTCATGTCCCATCGTTTAGGGATCCTCTCTCCTATCTGGTCACTCTCCA
GTAAGATCATCAGTGCTGTGGTTTCAGCCTATCACGTGGGAGGGAGCGCT
GTCAGCCAGTCCATAATAGACAGTGAGGTCAGAGGGTACGCAACAGCCCA
GTCAGGCAATAACCTAAGATACAGGATAGATAACGCAAATGTACCCTGAG
CTGTTTCCCCAGGTCTTCTCCTAGCTCTGTCCTTCCCGGGGGTAGGCACT
TTCTAGATCTAGTTCCTTCCGGGAACCACTGCCTGACCCTCCTTAAAGGG
ATCTTCTCTGCCCTCCCTGGTGCTACCCTCCTTCTCTCTCCCTATTTCAC
GCCGCTCCTTTCTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGACTTGGTGTTGGGAGACAGGCGTTGTTGG
ACTATTACAGGGACACAGCCTGTAAGCCATTGCAATAAACCCTTTTTAAC
TATATGAACTTATACATGTATACATTATATTTATATAATATATTATATAT
TTAAGTATATTTATATATAATATTTAAATTAAATATGTGTTTGCATTTTA
TTTCTTCTGTTTGTCTAGGTAACTCTGACTAATACACTCCCTAAACCATC
CCACCAACTAGATACCATGTATTAAAATATATGAGCCTTTAGGGGCCATC
CTCATTCAAACTCCACACATGATTAATTTAAAATATCTGTTTTAGGGCTG
GAGAGACGCCTCAGCAGTTGAGAGCACTGACTGCTCTGCTGAAGGTCTTG
AGTTCAAATCCACGCAACCACATGGTGGCTCACAACCATCTGTAATGAGA
TCTGCCACCCTCTTCTGGGGTGCCTGAAAACAGCTACAGTGTACTTGTAT
ATAATAAATAAATAAACCTAAAAAAATATATCTGTTTTACGCCACTTTGG
TTATAACAGCCCTAGCAAGCTAATGCATTCATTATAAGGGTGACACAGAC
CGGGTCAGAGGTAATGTGAGCTGAGGCTCCGAGTGTTTGTACCCCAGGTA
ACTGCCCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_o24.b1 MSMg01no079_o24.b1 CHROMAT_FILE:
MSMg01no079_o24.b1 PHD_FILE: MSMg01no079_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:41 2005
         (445 letters)



>mm_chr1_89063176_89064019
          Length = 844

 Score =  785 bits (406), Expect = 0.0
 Identities = 433/442 (97%), Gaps = 3/442 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtcttgtctccagtactgtggaggccagacagccccaagtcccacatcttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtcttgtctccagtactgtggaggccagacagccccaagtcccacatcttgt 264

                                                                       
Query: 65  gagccatgaccagctctaggaggcaccaatcactagtggtggccacactgaggatgaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 gagccatgaccagctctaggaggcaccaatcactagtggtggccatactgaggatgaaca 324

                                                                       
Query: 125 ccatgtctagttgggattgtcgtaattaacggggtgggcctgagattcct-aagtttggg 183
           ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct: 325 ccatgtctagttgggattgtcgtaactaacggggtgggcctgagattc-tcaagtttggg 383

                                                                       
Query: 184 aggctggaagtatatatgggtcagggatctggcatggtcaggttctggtgaggacccatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggctggaagtatatatgggtcagggatctggcatggtcaggttctggtgaggacccatt 443

                                                                       
Query: 244 cctgtttgtggatggcagtcttcctgctccatccccacatggaagagagcagagaagtaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgtttgtggatggcagtcttcctgctccatccccacatggaagagagcagagaagtaa 503

                                                                       
Query: 304 ggcaagcccattcatgtcccatcgtttagggatcctctctcctatctggtcactctccag 363
           |||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct: 504 ggcaagcccattcatgtcccatcgtt-agggatcctctctcatatctgatcactctccag 562

                                                                       
Query: 364 taagatcatcagtgctgtggtttcagcctatcacgtgggagggagcgctgtcagccagtc 423
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 563 taagatcatcagtgctgtggtttcagcctatcaagtgggagggagcgctgtcagtcagtc 622

                                 
Query: 424 cataatagacagtgaggtcaga 445
           ||||||||||||||||||||||
Sbjct: 623 cataatagacagtgaggtcaga 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space:   362790
Effective search space used:   362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)