BAC Information

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BAC

Clone NameMSMg01-079P09
Chromosome1 (Build37)
Map Location 66,819,667 - 66,984,257
singlet/doubletdoublet
Overlap gene1110028C15Rik, Acadl, Myl1
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe
Downstream geneLOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079P09.T7 (MSMg01no079_p09.b1)MSMg01-079P09.TJ (MSMg01no079_p09.g1)
ACCAG300918AG300919
length720720
length of high quality
(start - end)		683 (38 - 720)618 (67 - 684)
definitionCHROMAT_FILE: MSMg01no079_p09.b1 PHD_FILE: MSMg01no079_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:43 2005CHROMAT_FILE: MSMg01no079_p09.g1 PHD_FILE: MSMg01no079_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,819,667 - 66,820,345)(66,983,640 - 66,984,257)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
TATTGTATCTATTGATTTACACATACTGAAGAATTCTTACATCACTAAAA
TGACGCCTATTTAGTCACAGTGTTTTTTAAAAATGTGTTCCCATTGGCCT
ACTATCAAGACCTCACCTTATGACCAAATTACACATCTATGGGTTAATCT
CTCAGGATCTAAATGACCCAATCACCCCTCAAGAGCTGGGATTATGACCT
AGGGACTAATGCTGAATACATGTGACTTTTGGAGAAACATTTGATATCTA
AATCTTGCCAAGCAGTTTAAGAAGCAAAAATGTATCTAAAGTTATTTCGT
AAAGCAAGAACTCTACATACCTGTTTCTCTATGTTTCGAAGAAGTAGTGT
AGGGCTGCTTGGTGACATCTCAAAATCGTGTTCTGGTAAAGGCTCTTCAC
TCCTCTGGGGAACCTGAGAATTCACTGAAGTGTTTAATGAAACTGCTTGG
TTTGAAAACTGTATTTGTTTTTTCAAAATGTCTTTTGGAAGCTGACATTC
TTCTAAGATCACTATCCCCTAGGGGGTAAAAAACAGTAAAGTGATCACAT
CCTACTATCCTCATAGGAAACATAAGATGAAGAATTGAAAATATAGTTTA
TATGTCTAAAACAGCTGGCTGATTAGGCTGGGAGAGATGGCTCAGCAATA
AAAGTATGTACTATTTATTC

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGGATAAGAGGGTTTCTGATAAAGGCTGAGAA
GAATGTCTAATGTGACAAGAGGAGAGAAGAGTGGTTGCATGCCAGGCAGA
AAAGATTTGAGACACACCAAATGATGATCTCTAACCAAGGCCCTAACCAA
ATGGCTGTGTAATCAGATCACACGTTTGCTCAAAGAGCTGACGATATTCC
TATTTAACAAGGAGGAGAAGCAAGACAGGGGTTTGCCATTCTAACAGTGG
ATGGGAGGTGAGTTGTTTTCTCTCATTTATTTTTGAGCACATAACATAGA
TCTAACATTTAAAGTTTAATTTCCTCTCTGGATTAGCTATAGTTTACTAT
TTCTTGTGTCAACTGGTATGTTTACACTTATATTTTGATTTTCAGTAGGT
AAAGAAAAAGCTAAGCTTTTATTGTTGATATGTTAAAGATTTAGAGAAAT
ACTAGGATGAAGTAGTTTAACAGTTTCTTAGCACTTTATGGCTCCTATTT
TAATAGTAACAACAAACCTTAATGTGATATCTAAGTGGTTAAAAATAGCT
TATTCACAAATAAATTGGAGTTTGGTGCTGACTTTGTAGTTTTTTCACAA
GTTTTTATACAAATTTATCATGTTTCCTATGTATACAAGGCCACCACATC
TTTTCATCTGAAAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_p09.b1 MSMg01no079_p09.b1 CHROMAT_FILE:
MSMg01no079_p09.b1 PHD_FILE: MSMg01no079_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:43 2005
         (683 letters)



>mm_chr1_66819463_66820545
          Length = 1083

 Score = 1305 bits (675), Expect = 0.0
 Identities = 678/679 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatattgtatctattgatttacacatactgaagaattcttacatcactaaaat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatattgtatttattgatttacacatactgaagaattcttacatcactaaaat 264

                                                                       
Query: 65  gacgcctatttagtcacagtgttttttaaaaatgtgttcccattggcctactatcaagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacgcctatttagtcacagtgttttttaaaaatgtgttcccattggcctactatcaagac 324

                                                                       
Query: 125 ctcaccttatgaccaaattacacatctatgggttaatctctcaggatctaaatgacccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcaccttatgaccaaattacacatctatgggttaatctctcaggatctaaatgacccaa 384

                                                                       
Query: 185 tcacccctcaagagctgggattatgacctagggactaatgctgaatacatgtgacttttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcacccctcaagagctgggattatgacctagggactaatgctgaatacatgtgacttttg 444

                                                                       
Query: 245 gagaaacatttgatatctaaatcttgccaagcagtttaagaagcaaaaatgtatctaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaaacatttgatatctaaatcttgccaagcagtttaagaagcaaaaatgtatctaaag 504

                                                                       
Query: 305 ttatttcgtaaagcaagaactctacatacctgtttctctatgtttcgaagaagtagtgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatttcgtaaagcaagaactctacatacctgtttctctatgtttcgaagaagtagtgta 564

                                                                       
Query: 365 gggctgcttggtgacatctcaaaatcgtgttctggtaaaggctcttcactcctctgggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggctgcttggtgacatctcaaaatcgtgttctggtaaaggctcttcactcctctgggga 624

                                                                       
Query: 425 acctgagaattcactgaagtgtttaatgaaactgcttggtttgaaaactgtatttgtttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acctgagaattcactgaagtgtttaatgaaactgcttggtttgaaaactgtatttgtttt 684

                                                                       
Query: 485 ttcaaaatgtcttttggaagctgacattcttctaagatcactatcccctagggggtaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcaaaatgtcttttggaagctgacattcttctaagatcactatcccctagggggtaaaa 744

                                                                       
Query: 545 aacagtaaagtgatcacatcctactatcctcataggaaacataagatgaagaattgaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacagtaaagtgatcacatcctactatcctcataggaaacataagatgaagaattgaaaa 804

                                                                       
Query: 605 tatagtttatatgtctaaaacagctggctgattaggctgggagagatggctcagcaataa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatagtttatatgtctaaaacagctggctgattaggctgggagagatggctcagcaataa 864

                              
Query: 665 aagtatgtactatttattc 683
           |||||||||||||||||||
Sbjct: 865 aagtatgtactatttattc 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no079_p09.g1 MSMg01no079_p09.g1 CHROMAT_FILE:
MSMg01no079_p09.g1 PHD_FILE: MSMg01no079_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:43 2005
         (618 letters)



>mm_chr1_66983440_66984457
          Length = 1018

 Score = 1195 bits (618), Expect = 0.0
 Identities = 618/618 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggataagagggtttctgataaaggctgagaagaatgtctaatgtgacaagaggagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tttggataagagggtttctgataaaggctgagaagaatgtctaatgtgacaagaggagag 759

                                                                       
Query: 61  aagagtggttgcatgccaggcagaaaagatttgagacacaccaaatgatgatctctaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aagagtggttgcatgccaggcagaaaagatttgagacacaccaaatgatgatctctaacc 699

                                                                       
Query: 121 aaggccctaaccaaatggctgtgtaatcagatcacacgtttgctcaaagagctgacgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaggccctaaccaaatggctgtgtaatcagatcacacgtttgctcaaagagctgacgata 639

                                                                       
Query: 181 ttcctatttaacaaggaggagaagcaagacaggggtttgccattctaacagtggatggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttcctatttaacaaggaggagaagcaagacaggggtttgccattctaacagtggatggga 579

                                                                       
Query: 241 ggtgagttgttttctctcatttatttttgagcacataacatagatctaacatttaaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ggtgagttgttttctctcatttatttttgagcacataacatagatctaacatttaaagtt 519

                                                                       
Query: 301 taatttcctctctggattagctatagtttactatttcttgtgtcaactggtatgtttaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 taatttcctctctggattagctatagtttactatttcttgtgtcaactggtatgtttaca 459

                                                                       
Query: 361 cttatattttgattttcagtaggtaaagaaaaagctaagcttttattgttgatatgttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cttatattttgattttcagtaggtaaagaaaaagctaagcttttattgttgatatgttaa 399

                                                                       
Query: 421 agatttagagaaatactaggatgaagtagtttaacagtttcttagcactttatggctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agatttagagaaatactaggatgaagtagtttaacagtttcttagcactttatggctcct 339

                                                                       
Query: 481 attttaatagtaacaacaaaccttaatgtgatatctaagtggttaaaaatagcttattca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 attttaatagtaacaacaaaccttaatgtgatatctaagtggttaaaaatagcttattca 279

                                                                       
Query: 541 caaataaattggagtttggtgctgactttgtagttttttcacaagtttttatacaaattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caaataaattggagtttggtgctgactttgtagttttttcacaagtttttatacaaattt 219

                             
Query: 601 atcatgtttcctatgtat 618
           ||||||||||||||||||
Sbjct: 218 atcatgtttcctatgtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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