Query= MSMg01no080_a06.b1 MSMg01no080_a06.b1 CHROMAT_FILE:
MSMg01no080_a06.b1 PHD_FILE: MSMg01no080_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:47 2005
(368 letters)
>mm_chr1_29049538_29050308
Length = 771
Score = 656 bits (339), Expect = 0.0
Identities = 359/367 (97%), Gaps = 3/367 (0%)
Strand = Plus / Plus
Query: 5 gaattctcctaaaaatccgtttatttccttcaattactgaggttttctaagttgcattaa 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctaaaaatgtgtttatttccttcaattactgaggttttctaagttgcattaa 264
Query: 65 aaaaaaaaa---gtcttctttactttttctagattcttccaatccaagtgctataattat 121
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaaaaaaaaagtcttctttactttttctagattcttccaatccaagtgctataattat 324
Query: 122 aaactttcagctagatggacactgaaaacattaacactttggggtttctgtctcccgttt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaactttcagctagatggacactgaaaacattaacactttggggtttctgtctcccgttt 384
Query: 182 tagccatggtaaactttgacaagaactttcaaatttctctgccagatgagtgatactgag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 tagccatggtaaactttgacaagaactttcaaatttctctgccagatgagtgatattgag 444
Query: 242 ttaggcctgattcatttgctgcacaggaggtgcatcttgggtacatcatacttgtggaag 301
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ttaggcctgattcatttgctgcacaggaggtgtatcttgggtacatcatacttgtggaag 504
Query: 302 gatgaattttggagactcaagatattgatcatcctttgtgcgtgtcttccttaatatacc 361
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 gatgaattttggagactcaagatattgatcatcctttgtgtgtgtcttccttaatatacc 564
Query: 362 attcaga 368
|||||||
Sbjct: 565 attcaga 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 771
Length adjustment: 9
Effective length of query: 359
Effective length of database: 762
Effective search space: 273558
Effective search space used: 273558
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_a06.g1 MSMg01no080_a06.g1 CHROMAT_FILE:
MSMg01no080_a06.g1 PHD_FILE: MSMg01no080_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:48 2005
(527 letters)
>mm_chr1_29205461_29206387
Length = 927
Score = 967 bits (500), Expect = 0.0
Identities = 521/528 (98%), Gaps = 2/528 (0%)
Strand = Plus / Minus
Query: 1 agtatcttattgactagatagaacttctgtaggtattctgttatgctgaagtgtttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agtatcttattgactagatagaacttctgtaggtattctgttatgctgaagtgtttggaa 668
Query: 61 aacaataaaaagttaaataaactcacagaaatggtatgaaaaatgatgattctgtaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aacaataaaaagttaaataaactcacagaaatggtatgaaaaatgatgattctgtaagta 608
Query: 121 caaaaatataactggttcatatagggaccggaaaggtggagggtactatttctgtaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caaaaatataactggttcatatagggaccggaaaggtggagggtactatttctgtaggct 548
Query: 181 agatcaaggatctaattcaggaatagaatggagacatttttagaagagaacttttgggat 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agatcaaggatctaattcagggatagaatggagacatttttagaagagaacttttgggat 488
Query: 241 tcagctgtcaaacatgttaaaatcgctgaaagaaagccagtatcatggagctagaggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcagctgtcaaacatgttaaaatcgctgaaagaaagccagtatcatggagctagaggaaa 428
Query: 301 gtgggttttataccagttataggtcataatgcagattttttcatacatttc-ttctagat 359
||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct: 427 gtgggttttataccagttataggtcataatgcagagtttttcatatatttccttctagat 368
Query: 360 agccagaactacaataaagagagagaaaaataattctataattccatatttatagattac 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 367 agccagaactacaataaagagagagaaaaataattctataatcccatatttatagattac 308
Query: 420 cctctgttctaggggaagtttattttaatttgatagatgtgatatgaatagaaataatga 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cctctgttctaggggacgtttattttaatttgatagatgtgatatgaatagaaataatga 248
Query: 480 tattacctaattctatttcattaaatacataatacatttttctggaag 527
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 247 tattacctaattctatttcattaaatacataatacatttt-ctggaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
