Query= MSMg01no080_d04.b1 MSMg01no080_d04.b1 CHROMAT_FILE:
MSMg01no080_d04.b1 PHD_FILE: MSMg01no080_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:01 2005
(418 letters)
>mm_chr1_44684622_44685439
Length = 818
Score = 754 bits (390), Expect = 0.0
Identities = 410/420 (97%), Gaps = 8/420 (1%)
Strand = Plus / Plus
Query: 4 ggaattctattcctttttctaatttcaaaccctctcctcctcctcctccttctcctcctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattctattcctttttctaatttcaaaccctctcctcctcctcctccttctcctcctc 259
Query: 64 ctcttctttcttttccttctctgtctctg--tctctgtctctgtgactctctg----tct 117
||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||
Sbjct: 260 ctcttctttcttttccttctctgtctctgtctctctgtctctgt--ctctctgtctctct 317
Query: 118 ctctgtctctgtttctctctctctcttcctatttttccagataagcaaactgaacagaac 177
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 318 ctctatctctgtttctctctctctcttcctatttttccagataaacaaactgaacagaac 377
Query: 178 tcattcttgatccatgccatttgctgttgattgagtagtttcttagatgacctggtctta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcattcttgatccatgccatttgctgttgattgagtagtttcttagatgacctggtctta 437
Query: 238 ggccagatgcagcatgtctcagaagatgatatttagtagaatgatgagtgcaggatagtc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggccagatgcagcatgtctcagaagatgatatttagtagaatgatgagtgcaggatagtc 497
Query: 298 actactgagtatttaggaaaggcaggtttctcaaggcagataatgtgcccagtgtgtgcg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 actactgagtatttaggaaaggcaggtttctcaaggcagataatgtgcccagtgtgtgcg 557
Query: 358 tatgcgcatgcatacaggtctcctcccacccttctgtgtgtgtgtgtgtgtgtgtgtgtg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tatgcgcatgcatacaggtctcctcccacccttctgtgtgtgtgtgtgtgtgtgtgtgtg 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_d04.g1 MSMg01no080_d04.g1 CHROMAT_FILE:
MSMg01no080_d04.g1 PHD_FILE: MSMg01no080_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:01 2005
(487 letters)
>mm_chr1_44822672_44823558
Length = 887
Score = 942 bits (487), Expect = 0.0
Identities = 487/487 (100%)
Strand = Plus / Minus
Query: 1 attgtattaaaaaaaagaaacctcattttgctcactgttcctctttgtatcatgcaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 attgtattaaaaaaaagaaacctcattttgctcactgttcctctttgtatcatgcaaatg 628
Query: 61 ttacttaataactttttagattaaaatttaaaataaagtgaatggttttgagattaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttacttaataactttttagattaaaatttaaaataaagtgaatggttttgagattaatgc 568
Query: 121 aaacaaataaaagtagccatgatgctctaataaaagaaatttgcatgtaagtatttgcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaacaaataaaagtagccatgatgctctaataaaagaaatttgcatgtaagtatttgcta 508
Query: 181 atgaacagaagatttagtttggatgaatcctgaagcctgttctcatgacaggatgaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atgaacagaagatttagtttggatgaatcctgaagcctgttctcatgacaggatgaatct 448
Query: 241 attactgcagttaaatgtttgcagaccttattcatttccaaatatttcgttagtgcggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attactgcagttaaatgtttgcagaccttattcatttccaaatatttcgttagtgcggga 388
Query: 301 aacaagacaattcatggcttgtaaaagagaacaaacctccctaaaacatctggcatactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aacaagacaattcatggcttgtaaaagagaacaaacctccctaaaacatctggcatactt 328
Query: 361 acacacttttcgctgtcaaatacaaaacacaaatgtttatttgactcagaatctttgcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acacacttttcgctgtcaaatacaaaacacaaatgtttatttgactcagaatctttgcat 268
Query: 421 atgaaagtgaatatcctcttgtcagttttatcatctgcgcaaaatgatattctatgaagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgaaagtgaatatcctcttgtcagttttatcatctgcgcaaaatgatattctatgaagc 208
Query: 481 tggcagt 487
|||||||
Sbjct: 207 tggcagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
