BAC Information

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BAC

Clone NameMSMg01-080E16
Chromosome1 (Build37)
Map Location 105,508,431 - 105,508,789
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080E16.T7 (MSMg01no080_e16.b1)MSMg01-080E16.TJ (MSMg01no080_e16.g1)
ACCAG301170AG301171
length706710
length of high quality
(start - end)
367 (35 - 401)246 (68 - 313)
definitionCHROMAT_FILE: MSMg01no080_e16.b1 PHD_FILE: MSMg01no080_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:09 2005CHROMAT_FILE: MSMg01no080_e16.g1 PHD_FILE: MSMg01no080_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCT
TTCATACCTCTCCATGAACCTGACCTGCTTTCTGTACCTTTTCAGTCTCT
GGCTTTGACCAATAAAGTGGGATGAAAGAAATCTCTATAAATTTCTGAGT
ACAGATGGTAATAAAATTCTAAAATTATTCATTACAATGCTTGTAAGAAT
GGCTGTTGTCAACATAGACAACTTCTGATTATCTGAGACAGGAAGGCTCA
AGAGACCATGCAAATTGGTTATGTTGTCTGAGAAATTGGTACTCATTGGC
ACTCAGTAAAGACATTTATTCCTGGCATGTTGTAGCTTCCTTGAGGATTG
AAACATTCCTTCTCTGAGATAAACTCATTAAAAGACAGGATATTTGCAGG
GATGTAGAACACCCCGGTGTTCTAAAAGGAGGTAAATCATTTAATCATCA
AAGGAAGCTCATTAAAATCAGAAAGTAAACTATAGAGTGGCCTCAAACTT
TTTCTAAAACTACCTGGCTCCTGGCTACACTAGTACACTCTGTCATTCAT
ATATATATATACATATATATATATATATATATATATATACATACCTATCC
CTATATATTCCTTTTTTTTTTTTTGCCTCCCCGTTTCTCCCCCCCCTTTT
TTTTTCCCCCCTCCTCTTTCCTCCCTCTTCTTATTTTTTTTTTCCTTCCC
CCTTTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATA
TGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGAT
TGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTT
CTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGA
GTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTT
GTTACCCTCTATCTATAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTC
AGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTG
TACAGCCACCCGGTGTTTGGACCTCCTCCTGCCTGAAGGTGATGGCCCTT
TACAGGATCTTTCCCATAACCTGTGTTGTTTTGGCCTGCACGTGTCCATT
TGTCTGCATTCTTACATGTCTCATTCCTCATATGTTCTGTGGCTCTTGTC
GGCACCTTGGCTGTCTTTCTTGTATCTGCTTTATTTTGCCCCTTTTTTAT
TCCCCTTCTTTTTTCCCTTTTTTTTTTCACACCTTTCTTTTCTTTGTATT
CCTTATGTTTCTCCCCCCCCTTGTTTTCCCTCCCCCCCCCCTTTTCTCCC
TTTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_e16.b1 MSMg01no080_e16.b1 CHROMAT_FILE:
MSMg01no080_e16.b1 PHD_FILE: MSMg01no080_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:09 2005
         (367 letters)



>mm_chr1_105508222_105508989
          Length = 768

 Score =  656 bits (339), Expect = 0.0
 Identities = 354/359 (98%), Gaps = 1/359 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattctttcatacctctccatgaacctgacctgctttctgtaccttttcagtctctggc 69
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattctttcatacctttccatgaacctgacctgctttctgtaccttttcagtctctggc 269

                                                                       
Query: 70  tttgaccaataaagtgggatgaaagaaatctctataaatttctgagtacagatggtaata 129
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tttgaccaataaagtgggatggaagaaatctctataaatttctgagtacagatggtaata 329

                                                                       
Query: 130 aaattctaaaattattcattacaatgcttgtaagaatggctgttgtcaacatagacaact 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaattctaaaattattcattacaatgcttgtaagaatggctgttgtcaacatagacaact 389

                                                                       
Query: 190 tctgattatctgagacaggaaggctcaagaga-ccatgcaaattggttatgttgtctgag 248
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 390 tctgattatctgagacaggaaggctcaagagaaccatgcaaattggttatgttgtctgag 449

                                                                       
Query: 249 aaattggtactcattggcactcagtaaagacatttattcctggcatgttgtagcttcctt 308
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 450 aaattggtactcattggcactcagtaaagacatttattcctggtatgttgtagtttcctt 509

                                                                      
Query: 309 gaggattgaaacattccttctctgagataaactcattaaaagacaggatatttgcaggg 367
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaggattgaaacattccttctctgagataaactcattaaaagacaggatatttgcaggg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 768
Length adjustment: 9
Effective length of query: 358
Effective length of database: 759
Effective search space:   271722
Effective search space used:   271722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)