BAC Information

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BAC

Clone NameMSMg01-080F02
Chromosome1 (Build37)
Map Location 20,623,904 - 20,624,270
singlet/doubletsinglet
Overlap genenone
Upstream genePkhd1
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F02.T7 (MSMg01no080_f02.b1)MSMg01-080F02.TJ (MSMg01no080_f02.g1)
ACCAG301190AG301191
length700696
length of high quality
(start - end)
427 (41 - 467)418 (71 - 488)
definitionCHROMAT_FILE: MSMg01no080_f02.b1 PHD_FILE: MSMg01no080_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:11 2005CHROMAT_FILE: MSMg01no080_f02.g1 PHD_FILE: MSMg01no080_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATATTTGCGGCGCTAAACGACTACTATATCGAGAGGATCCGCGGAATTC
TCCAAGATCTTAAATTGGGAGAGATCTTGGAATGAGTCCATGAGCACTTT
AATATATTTGCTTTATCTGGAATCAGTTGTAGGAGAGTCTGTGCCTATTT
TCATCCTTTTATATTTAAAGCAGTCCTAAAAACTGTGTACTTTCCATAAA
ATTTCAATATATATGCATATATCTATATCTATATATATGAAAATATGACT
ACTCCTTTCCTTTCCTCCACTTTTTATTCTGTTAGAATTGGCTTGATTTC
TTATCCCATTAAGTTTTATTTTAAATTTAAATTTGTTGGGTTCAGCAAGT
TATTGTGATTTCATTTCAGTCCCACTCTGGTTTCTGAGGAACAGCTGTTT
GCCTGAATGAATATGTTGCTTATGCTGGGGTCTTCTGTGTGGCTTCTCCA
GGCAACTTTGACTCAAGGGCACCTGGGAGTACAGTCAGATCTTTTAATGC
TTGCACAGGATATGGCATGCACCGAGTACAGGCAGCTGTCTTCCCTTGGC
ATGAGAGGGTGTAGGCGGAGCCACCAAATCCCTTGCATATTTCCCCTTTC
CTCACTTGACACTGCCTATTTGTGTTGATAAACACAGGTCACCATTTTTC
CTTCTATGTACCACCGCTTCCGCGTACTCCATCCCCCCCGACCCTGTTCN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATG
GGGTTAGTTGAACTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATT
GGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATACTTTCCCAAT
CAGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTAAGTCCCATTTG
TCCATACTCGATCTTTCAGCACAAGCCATTGCTGTTCTGTTTAGGAATTT
TTTCCCTGTGCCCATATCTTCGAGGCTTTTCTCCCCACTTTCTCCTCTAT
TAATTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTGATCCACTTAGACT
TGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCGCATTCTTCTACAT
GATAACTGCCTAGAAACTTATAATACCCAAGATATAATTTGCCTAACTCA
AGAAAATCTTGAATAAAAAAGACCAACTTGTAGATACTTCATCCCTCCTT
AGAACAGGGAATAAAATACCCATGAAAGGAGTTACAGAGACAAAGCTTGG
AGCTAATACGAAAGGATGCATCATCTAGAGACTGTCCCCCTTGCGGATCC
ATTCCCTATTCTTCCCCCAAACCTAGACATTATTGCTTTCCCCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f02.b1 MSMg01no080_f02.b1 CHROMAT_FILE:
MSMg01no080_f02.b1 PHD_FILE: MSMg01no080_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:11 2005
         (427 letters)



>mm_chr1_20623904_20624731
          Length = 828

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%), Gaps = 1/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcc-aagatcttaaattgggagagatcttggaatgagtccatgagcactttaa 62
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 367 ggaattctccaaagatcttaaattgggagagatcttggaatgagtccatgaggactttaa 308

                                                                       
Query: 63  tatatttgctttatctggaatcagttgtaggagagtctgtgcctattttcatccttttat 122
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 307 tatatttgctttatctggaatcagttgtaggagagcctgtgcctattttcatccttttat 248

                                                                       
Query: 123 atttaaagcagtcctaaaaactgtgtactttccataaaatttcaatatatatgcatatat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atttaaagcagtcctaaaaactgtgtactttccataaaatttcaatatatatgcatatat 188

                                                                       
Query: 183 ctatatctatatatatgaaaatatgactactcctttcctttcctccactttttattctgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctatatctatatatatgaaaatatgactactcctttcctttcctccactttttattctgt 128

                                                                       
Query: 243 tagaattggcttgatttcttatcccattaagttttattttaaatttaaatttgttgggtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tagaattggcttgatttcttatcccattaagttttattttaaatttaaatttgttgggtt 68

                                                                       
Query: 303 cagcaagttattgtgatttcatttcagtcccactctggtttctgaggaacagctgtttgc 362
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 67  cagcaagttattgtgatttcatttcagtcccactcgggtttctgaggaacagctgtttgc 8

                  
Query: 363 ctgaatg 369
           |||||||
Sbjct: 7   ctgaatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space:   342342
Effective search space used:   342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)