TTTGCGGCGCTAAACGACTCCTATAGTTCGAGAACCGCGGAATTCAGTTG
AGTATGCTCTATCCTGGCCTGTGGCTTTGAAGTCTCTGTTGAGAACCATT
ATAACACACCACAGTCACAACATCTGGAAAGATTTCATGTAAAATTTCAA
TAAAATGATTCAGGTGCCAGAATATTGGCATATAAGCACTTGTGCTCTCC
CTTCTCCCTCTTCATATATATGTGTGTACATATATACACACACACATATA
TATTCTATATGCATAATCTGTATATAAATATTTTCTAATAATCTATTATA
TACTTTAACCCTATCATATAGCCAGAAAACTATTTGTTGATGTCCCTCTG
CCAATTAAAAGTGGACTTTCATGCTTGGCAATCATGGTGCATGCCTTTAA
TCCCAGAGCCCAAGGTCAGCCTGGTTTACAGAACCAGTTCCAGGACATCC
AGGGCTGCACCGAGAAACCCTGTCTTGAAAGGAAAAGGGGGGAAATAAAG
GCCAATTCCTGGCTATGTTCTCTGGCTATACGGTGCGGTTGCTCGGAGTA
AAGCCATACCTGGGGTACTAATGTCTGCTCATAGTATGGATAAACTCTGA
GGAGAGTATGCCATCCTGTGTCCTGAGGTGGACTTCAGCGCTGATGCCTT
TGTTAGGTTTCTGCAGACACGGTTTGTAACACTGCTAAACGATGTTCTCT
TGC

TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGATTAGCTCTATACCCATTTTTTTTAAAAAT
TGGGGTATTTGGTTTGTTGGAGTCTAACTTCTTAAGTTCTTTACATATTT
TGGACATAGCCCTCTGTCAGATATAGGGTTAGTGAAGATCTTTTCCCAAT
CTGTAGACTGCCATTTTGTCTTCTGAAGGTGTACTTTGCCTTACAGAAGC
TTTGCAGTTTCATAAGGTCCCATTTATCAATTGCTGATCTTAGAACCTGA
GCCATTGGTGTTCTGTTCATGAAATTGTCTTCTGTACCAATGTGTCCAAG
GCTATTTCCTGCTTTCTCTTCTATTAGATTTAGTGTATCCAGTGTTCTGT
TGAGGTCTTCGACTCACTTGAACTTGAGTTTTGGCAGGGCGATAAATATG
GTTCTATTTGCATTCTTCTACATGCAGACATCCAGTTAGACCAGCATCAT
TTGTTGAAGATGCTTTCTTTTTTCTATTGTATGGTTTTGTAAGCTGGACA
TTCTTAATGTATGATCCTCAGACCAGCACCATGAAGATGGCATGGGAATT
TACAAATGCCCTGTTCTAGTCTTACTAAGTCTACAGGCTGAGTCTGAAAT
CTGAATACCCCAATAACGCTATATACGTGATTCTGATTGTAACAACTTTG
TATACT

Query= MSMg01no080_h22.b1 MSMg01no080_h22.b1 CHROMAT_FILE:
MSMg01no080_h22.b1 PHD_FILE: MSMg01no080_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:25 2005
         (568 letters)



>mm_chr1_56933332_56934299
          Length = 968

 Score =  948 bits (490), Expect = 0.0
 Identities = 545/566 (96%), Gaps = 7/566 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   attcagttgagt---atgctctatcctggcctgtggctttgaagtctctgttgagaacca 62
           ||||| ||||||   ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 attcaattgagtaggat--tctatcctggcctgtggctttgaagtctctgttgagaacca 730

                                                                       
Query: 63  ttataacacaccacagtcacaacatctggaaagatttcatgtaaaatttcaataaaatga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttataacacaccacagtcacaacatctggaaagatttcatgtaaaatttcaataaaatga 670

                                                                       
Query: 123 ttcaggtgccagaatattggcatataagcacttgtgctctcccttctccctcttcatata 182
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 669 ttcaggtgccagaatattggcatataagcacttgcgctctcccttctccctctccatata 610

                                                                       
Query: 183 tatgtgtgtacatatatacacacacacatatatattctatatgcataatctgtatataaa 242
           |||||||||  ||||||| ||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 609 tatgtgtgt--atatatatacacacatatatatattctatatgcataatctgtatgtaaa 552

                                                                       
Query: 243 tattttctaataatctattatatactttaaccctatcatatagccagaaaactatttgtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tattttctaataatctattatatactttaaccctatcatatagccagaaaactatttgtt 492

                                                                       
Query: 303 gatgtccctctgccaattaaaagtggactttcatgcttggcaatcatggtgcatgccttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gatgtccctctgccaattaaaagtggactttcatgcttggcaatcatggtgcatgccttt 432

                                                                       
Query: 363 aatcccagagcccaaggtcagcctggtttacagaaccagttccaggacatccagggctgc 422
           |||||| |||  ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 431 aatcccggagttcaaggccagcctggtctacagaaccagttccaggacatccagggctgc 372

                                                                       
Query: 423 accgagaaaccctgtcttgaaaggaaaaggggggaaataaaggccaattcctggctatgt 482
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 accgagaaaccctgtcctgaaaggaaaaggggggaaataaaggccaattcctggctatgt 312

                                                                       
Query: 483 tctctggctatacggtgcggttgctcggagtaaagccatacctggggtactaatgtctgc 542
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tctctggctatgcggtgcagttgctcggagtaaagccatacctggggtactaatgtctgc 252

                                     
Query: 543 tcatagtatggataaactctgaggag 568
           ||||||||||||||||||||||||||
Sbjct: 251 tcatagtatggataaactctgaggag 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)