BAC Information

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BAC

Clone NameMSMg01-080I15
Chromosome1 (Build37)
Map Location 149,093,585 - 149,241,316
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080I15.T7 (MSMg01no080_i15.b1)MSMg01-080I15.TJ (MSMg01no080_i15.g1)
ACCAG301351AG301352
length700699
length of high quality
(start - end)
494 (41 - 534)539 (68 - 606)
definitionCHROMAT_FILE: MSMg01no080_i15.b1 PHD_FILE: MSMg01no080_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:28 2005CHROMAT_FILE: MSMg01no080_i15.g1 PHD_FILE: MSMg01no080_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,240,864 - 149,241,316)(149,093,585 - 149,094,122)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGGACTTCGATTTTGCTTAGTGCTGTTACTTTTATGCCTGCTTTCTTCA
TTCATATTTGGAATAAGGGAGTACTTAACTTGCCCTTTGTGTGACAGAAA
CCCACAATTAAGAGACAGGATATTTTAAACAGTTCTTAAGTTTTAATTTT
TTTAAAGATGGTAATATTTTAAACTTGGGCCTGGTTTTATATTGTAATAT
TAATATGAGTTCTTGGAGATAAAGAAGTTTTGATTTAACATATATGTGTG
TGTGTGTATGTGTGCATGTGTGTGAAGTTGACTAGTTGTTATTTTGATTG
TTTGTTTTTATAAACAATACAAACTAGTGTCACTGAGGAAGAAGAAACCT
CAGCTGACGAGCAGTCTACACCCGATTGGCTCGTGATGACCTATGTGTGT
GATCTTCTTGATGAATCATTGACATGGAGGCCCTACACCACTTGATTACT
GCTGACTCTGGGAAAATAGTCCAAGTTGCACAAGAAAGCAAGGAGAGGAC
CAGCCAATTGAATCTCTTATTCCATCTCCTCTGCTTCAGTTCCTGCTCCT
AGGTTCCTTCCATAACATTCTGCACTAGCTTTCCTTGGGAATCGAATTAT
ATCTTAACATGATCTAAATAAACTCTTTCCTTTCCAACTTTCCTTTCATT

ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCTCATTCATCCTCAAAGGCACCTTTCCCTTC
ACAGCCCCACGAGCAGAGAAGTTTTTATACAGAAGGAGAATTAATCATGT
GTTTGTCATAGTGCACACAAAATAAGTCATTTGATACAATCGAGCAAACT
GCTAGCTGTTAGTTCACTCCAAAGGAGTTCACAATACATTAGGCGTGCAC
TTCTCAGGAGGCAGGCATGATTGATGGCAAGGTAAAATATTTTAATTTTC
AATTTGCACAAAACAGCCCTCCACTTCAAAACCACATTCGAATGAAATTC
TGCTGTAATAGGATGGCATGTAATATGTTTCTATCTAGAGATTTTTTTTG
GATCCAATGCTGCATTATTCAAGGTCAGAGGGGTGACAACATGAAGATAG
ATGATAATTTATCATAAACAATTACAACTTCAGTGCTATTTTAACATATA
TTTTATTATTTCAAGTCATTTAATACTTGACATCAGTTCTTAGCTCAAGT
GTGACTTTTTGAATCTTATACATTTTTGCTACAATCTTAACTGCTAATAA
CACTGATACTTACATAAGCAAATTTGCTCTCTTATTACTGGCCTATGATC
TGCCACATAAACAATCTGACTGAGGGAGTCCATGAACTATACTCATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_i15.b1 MSMg01no080_i15.b1 CHROMAT_FILE:
MSMg01no080_i15.b1 PHD_FILE: MSMg01no080_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:28 2005
         (494 letters)



>mm_chr1_149240864_149241757
          Length = 894

 Score =  803 bits (415), Expect = 0.0
 Identities = 440/453 (97%), Gaps = 8/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggacttcgattttgcttagtgctgttacttttatgcctgctttcttcattca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaattcctggactttgattttgcttagtgctgttacttttatgcctgctttcttcattca 394

                                                                       
Query: 65  tatttggaataagggagtacttaacttgccctttgtgtgacagaaacccacaattaagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tatttggaataagggagtacttaacttgccctttgtgtgacagaaacccacaattaagag 334

                                                                       
Query: 125 acaggatattttaaacagttcttaagttttaatttttttaaagatggtaatattttaaac 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 333 acaggatattttaaacagttcttaagtttgaatttttttaaagatggtaatattttaaac 274

                                                                       
Query: 185 ttgggcctggttttatattgtaatattaatatgagttcttggagataaagaagttttgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgggcctggttttatattgtaatattaatatgagttcttggagataaagaagttttgat 214

                                                                       
Query: 245 ttaacatatatgtgtgtgtgtgt--------atgtgtgcatgtgtgtgaagttgactagt 296
           ||||||||| |||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 213 ttaacatatgtgtgtgtgtgtgtgtgtgtgtatgtgtgcatgtgtgtgaagttgactagt 154

                                                                       
Query: 297 tgttattttgattgtttgtttttataaacaatacaaactagtgtcactgaggaagaagaa 356
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tgttattttgattgtttatttttataaacaatacaaactagtgtcactgaggaagaagaa 94

                                                                       
Query: 357 acctcagctgacgagcagtctacacccgattggctcgtgatgacctatgtgtgtgatctt 416
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  acctcagctgaggagcagtctacacccgattggctcgtgatgacctatgtgtgtgatctt 34

                                            
Query: 417 cttgatgaatcattgacatggaggccctacacc 449
           |||||||||||||||||||||||||||||||||
Sbjct: 33  cttgatgaatcattgacatggaggccctacacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no080_i15.g1 MSMg01no080_i15.g1 CHROMAT_FILE:
MSMg01no080_i15.g1 PHD_FILE: MSMg01no080_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:29 2005
         (539 letters)



>mm_chr1_149093385_149094322
          Length = 938

 Score = 1019 bits (527), Expect = 0.0
 Identities = 536/539 (99%), Gaps = 1/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcattcatcctcaaaggcacctttcccttcacagccccacgagcagagaagttttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcattcatcctcaaaggcacctttcccttcacagccccacgagcagagaagttttta 260

                                                                       
Query: 61  tacagaaggagaattaatcatgtgtttgtcatagtgcacacaaaataagtcatttgatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagaaggagaattaatcatgtgtttgtcatagtgcacacaaaataagtcatttgatac 320

                                                                       
Query: 121 aatcgagcaaactgctagctgttagttcactccaaaggagttcacaatacattaggcgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcgagcaaactgctagctgttagttcactccaaaggagttcacaatacattaggcgtg 380

                                                                       
Query: 181 cacttctcaggaggcaggcatgattgatggcaaggtaaaatattttaattttcaatttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttctcaggaggcaggcatgattgatggcaaggtaaaatattttaattttcaatttgc 440

                                                                       
Query: 241 acaaaacagccctccacttcaaaaccacattcgaatgaaattctgctgtaataggatggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaacagccctccacttcaaaaccacattcgaatgaaattctgctgtaataggatggc 500

                                                                       
Query: 301 atgtaatatgtttctatctagagattttttttggatccaatgctgcattattcaaggtca 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 atgtaatatgtttctatctagagattttttt-ggatccaatgctgcattattcaaggtca 559

                                                                       
Query: 361 gaggggtgacaacatgaagatagatgataatttatcataaacaattacaacttcagtgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaggggtgacaacatgaagatagatgataatttatcataaacaattacaacttcagtgct 619

                                                                       
Query: 421 attttaacatatattttattatttcaagtcatttaatacttgacatcagttcttagctca 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 attttaacatatattttattatttcaagtcatttaatacttcacatcagttcttagctca 679

                                                                      
Query: 481 agtgtgactttttgaatcttatacatttttgctacaatcttaactgctaataacactga 539
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 agtgtgactttttgaatcttatatatttttgctacaatcttaactgctaataacactga 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space:   490912
Effective search space used:   490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)